rybpb RING1 and YY1 binding protein b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rybpbprovided by ZNC
Official Full Name: RING1 and YY1 binding protein bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-061103-96
See related: Ensembl:ENSDARG00000053459 AllianceGenome:ZFIN:ZDB-GENE-061103-96
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: Dedaf; zgc:153842
Summary: Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within apoptotic process and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human RYBP (RING1 and YY1 binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (44008115..44044311, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (44010579..44046775, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb94c02.y1 (e-PCR)
- UniSTS:191817

G46846 (e-PCR)
- UniSTS:107642

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transcription coregulator activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: RING1 and YY1-binding protein B

Names: DED-associated factor B; death effector domain-associated factor B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001012373.2 → NP_001012373.1 RING1 and YY1-binding protein B

See identical proteins and their annotated locations for NP_001012373.1

Status: PROVISIONAL

Source sequence(s)

BC125899

UniProtKB/Swiss-Prot

A0JMJ2, Q5EG55

UniProtKB/TrEMBL

B2GSG2

Related

ENSDARP00000069979.4, ENSDART00000075497.6

Conserved Domains (2) summary

smart00547
Location:21 → 43

ZnF_RBZ; Zinc finger domain

sd00030
Location:23 → 42

zf-RanBP2; RanBP2-type Zn finger [structural motif]