rrbp1a ribosome binding protein 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rrbp1aprovided by ZNC
Official Full Name: ribosome binding protein 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9795
See related: Ensembl:ENSDARG00000013763 AllianceGenome:ZFIN:ZDB-GENE-030131-9795
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb360; sb:cb360; wu:fa66b07; wu:fb58g03; zgc:171356; si:dkey-76k16.7
Summary: Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; cardiovascular system; and hatching gland. Orthologous to human RRBP1 (ribosome binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 13

Exon count:: 29

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (33611707..33639050, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (33502162..33529505, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AA658785 (e-PCR)
- UniSTS:206858

fc72h09.x1 (e-PCR)
- UniSTS:194376

fb58g03.x1 (e-PCR)
- UniSTS:190825

fb58g03.x1 (e-PCR)
- UniSTS:187250

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
is_active_in endoplasmic reticulum membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ribosome binding protein 1; ribosome-binding protein 1a

Names: ribosome binding protein 1 homolog a (dog)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001145555.1 → NP_001139027.1 ribosome-binding protein 1a

Status: PROVISIONAL

Source sequence(s)

BX005372

UniProtKB/TrEMBL

A0A8M1NQ07, B8A4D7

Related

ENSDARP00000118039.1, ENSDART00000133073.2

Conserved Domains (5) summary

pfam04554
Location:179 → 220

Extensin_2; Extensin-like region

pfam05104
Location:33 → 210

Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region

pfam13851
Location:708 → 885

GAS; Growth-arrest specific micro-tubule binding

pfam15035
Location:1049 → 1186

Rootletin; Ciliary rootlet component, centrosome cohesion

cl19252
Location:623 → 683

MreC; rod shape-determining protein MreC

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007124.7 Reference GRCz11 Primary Assembly

Range

33611707..33639050 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005156964.4 → XP_005157021.1 ribosome binding protein 1 isoform X2

UniProtKB/TrEMBL

A0A8M2B316

Conserved Domains (5) summary

pfam04554
Location:179 → 220

Extensin_2; Extensin-like region

pfam05104
Location:33 → 210

Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region

pfam13851
Location:708 → 885

GAS; Growth-arrest specific micro-tubule binding

pfam15035
Location:1049 → 1186

Rootletin; Ciliary rootlet component, centrosome cohesion

cl19252
Location:623 → 683

MreC; rod shape-determining protein MreC
XM_005156963.4 → XP_005157020.1 ribosome binding protein 1 isoform X1

UniProtKB/TrEMBL

A0A8M2B3S2

Conserved Domains (5) summary

pfam04554
Location:179 → 220

Extensin_2; Extensin-like region

pfam05104
Location:33 → 210

Rib_recp_KP_reg; Ribosome receptor lysine/proline rich region

pfam13851
Location:708 → 882

GAS; Growth-arrest specific micro-tubule binding

pfam15035
Location:1046 → 1183

Rootletin; Ciliary rootlet component, centrosome cohesion

cl19252
Location:623 → 683

MreC; rod shape-determining protein MreC

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001123059.1: Suppressed sequence

Description

NM_001123059.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.