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    LOC4346462 WPP domain-associated protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346462, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4346462
    Gene description
    WPP domain-associated protein
    Locus tag
    OSNPB_090133800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 21.5), leaves after flowering (RPKM 18.8) and 6 other tissues See more
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    Genomic context

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    See LOC4346462 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (2561815..2565555, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 2, chloroplastic Neighboring gene N-acetyl-D-glucosamine kinase Neighboring gene PRA1 family protein H Neighboring gene histone-lysine N-methyltransferase TRX1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    WPP domain-associated protein
    Names
    Os09g0133800
    P0406E03.34-1
    myosin heavy chain-like protein
    putative myosin heavy chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2561815..2565555 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757117.2 → XP_015612603.1  WPP domain-associated protein

      UniProtKB/TrEMBL
      A2YYQ1, A3BWA3, Q6K437
      Conserved Domains (1) summary
      COG1196
      Location:391 → 617
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_015757118.2 → XP_015612604.1  WPP domain-associated protein

      UniProtKB/TrEMBL
      A2YYQ1, A3BWA3, Q6K437
      Conserved Domains (1) summary
      COG1196
      Location:391 → 617
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_015757119.1 → XP_015612605.1  WPP domain-associated protein

      UniProtKB/TrEMBL
      A2YYQ1, A3BWA3, Q6K437
      Conserved Domains (1) summary
      COG1196
      Location:391 → 617
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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