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    LOC4324474 protein phosphatase 1 regulatory subunit SDS22 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324474, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324474
    Gene description
    protein phosphatase 1 regulatory subunit SDS22
    Locus tag
    OSNPB_010966400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 32.2), flower buds (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    See LOC4324474 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42618508..42621729, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic Neighboring gene mitochondrial-processing peptidase subunit alpha Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene transfer RNA leucine (anticodon UAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein phosphatase 1 regulatory subunit SDS22; toll-like receptor 7
    Names
    Os01g0966400
    P0458E05.30
    leucine-rich repeat family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      42618508..42621729 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793702.2 → XP_015649188.1  toll-like receptor 7 isoform X1

      Conserved Domains (4) summary
      cd09293
      Location:37 → 190
      AMN1; Antagonist of mitotic exit network protein 1
      cd00116
      Location:146 → 267
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:21 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:204 → 263
      LRR_8; Leucine rich repeat

    2. XM_015793709.2 → XP_015649195.1  protein phosphatase 1 regulatory subunit SDS22 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VDC9, B8A9Y7, B9EWM7, Q5JJV2
      Conserved Domains (2) summary
      sd00033
      Location:21 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:21 → 258
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein
    Heading Accession and Version

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