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    LOC4339179 disease resistance protein RGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339179, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339179
    Gene description
    disease resistance protein RGA2
    Locus tag
    OSNPB_050492200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    r1; YR1; YR7; YR11; YR20; YR22; YR24
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 6.5), roots after flowering (RPKM 3.9) and 6 other tissues See more
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    Genomic context

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    See LOC4339179 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24184443..24189249)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent protein kinase 14-like Neighboring gene transcription factor TGAL1-like Neighboring gene uncharacterized LOC4339180 Neighboring gene putative disease resistance protein RGA3 Neighboring gene transfer RNA glycine (anticodon GCC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA2
    Names
    NBS-LRR type resistance protein
    NBS-LRR-like protein
    Os05g0492200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24184443..24189249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785220.2 → XP_015640706.1  disease resistance protein RGA2

      UniProtKB/TrEMBL
      B7F9W6, B9FK64
      Conserved Domains (6) summary
      PLN03210
      Location:198 → 965
      PLN03210; Resistant to P. syringae 6; Provisional
      COG4886
      Location:550 → 671
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      PRK15386
      Location:968 → 1080
      PRK15386; type III secretion effector GogB
      sd00033
      Location:551 → 574
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:176 → 421
      NB-ARC; NB-ARC domain
      pfam18052
      Location:11 → 102
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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