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    LINC01141 long intergenic non-protein coding RNA 1141 [ Homo sapiens (human) ]

    Gene ID: 339505, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01141provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1141provided by HGNC
    Primary source
    HGNC:HGNC:49455
    See related
    AllianceGenome:HGNC:49455
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    1p36.12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (20359801..20428794, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (20183390..20252834, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (20686294..20755287, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376828 Neighboring gene NANOG hESC enhancer GRCh37_chr1:20605144-20605685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20616749-20617260 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20617261-20617771 Neighboring gene von Willebrand factor A domain containing 5B1 Neighboring gene uncharacterized LOC124903870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20669041-20669541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20680030-20680530 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20680531-20681031 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20701977-20702476 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 320 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:20706555-20707754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20727039-20727539 Neighboring gene NANOG hESC enhancer GRCh37_chr1:20729171-20729710 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:20732635-20733223 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:20737119-20737312 Neighboring gene MPRA-validated peak103 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 364 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:20769432-20769932 Neighboring gene uncharacterized LOC124903871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:20810004-20810938 Neighboring gene calcium/calmodulin dependent protein kinase II inhibitor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033887.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139254, BC040588, BC041010, DB060026

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      20359801..20428794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      20183390..20252834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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