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    rml-3 dTDP-4-dehydrorhamnose 3,5-epimerase [ Caenorhabditis elegans ]

    Gene ID: 180896, updated on 12-Jun-2024

    Summary

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    Gene symbol
    rml-3
    Gene description
    dTDP-4-dehydrorhamnose 3,5-epimerase
    Locus tag
    CELE_C14F11.6
    See related
    AllianceGenome:WB:WBGene00015781
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable racemase and epimerase activity. Predicted to be involved in cellular polysaccharide biosynthetic process. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See rml-3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Sequence:
    Chromosome: X; NC_003284.9 (6238123..6239065, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene SHSP domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Aspartate aminotransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables dTDP-4-dehydrorhamnose 3,5-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables racemase and epimerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in polysaccharide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    dTDP-4-dehydrorhamnose 3,5-epimerase
    NP_509046.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      6238123..6239065 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076645.5 → NP_509046.1  dTDP-4-dehydrorhamnose 3,5-epimerase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509046.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17993
      Conserved Domains (1) summary
      pfam00908
      Location:24 → 188
      dTDP_sugar_isom; dTDP-4-dehydrorhamnose 3,5-epimerase
    Nucleotide Protein
    Heading Accession and Version

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