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    AT2G29340 NAD-dependent epimerase/dehydratase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817483, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT2G29340
    Gene description
    NAD-dependent epimerase/dehydratase family protein
    Primary source
    Araport:AT2G29340
    Locus tag
    AT2G29340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16P2.28; F16P2_28
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (12597018..12599299)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene tropinone reductase Neighboring gene senescence-associated gene 13 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001124937.2
    NM_001336209.1
    NM_128488.4
    NM_179800.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    NAD-dependent epimerase/dehydratase family protein
    NP_001118409.1
    • NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565680.2
    • NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850131.1
    • NAD-dependent epimerase/dehydratase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29320.1); Has 120433 Blast hits to 120151 proteins in 3568 species: Archae - 990; Bacteria - 78930; Metazoa - 5151; Fungi - 6208; Plants - 2592; Viruses - 5; Other Eukaryotes - 26557 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12597018..12599299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179800.3 → NP_850131.1  NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850131.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNS5
      Conserved Domains (2) summary
      PRK09242
      Location:1 → 256
      PRK09242; tropinone reductase; Provisional
      cl21454
      Location:4 → 254
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. NM_128488.4 → NP_565680.2  NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565680.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DF84, F4IKM1, Q94C81, Q9ZW17
      UniProtKB/TrEMBL
      A0A654EX67
      Conserved Domains (1) summary
      cl21454
      Location:4 → 254
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    3. NM_001336209.1 → NP_001324177.1  NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IKM1

    4. NM_001124937.2 → NP_001118409.1  NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118409.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IKM1
      Conserved Domains (2) summary
      pfam00106
      Location:11 → 200
      adh_short; short chain dehydrogenase
      cl21454
      Location:4 → 202
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IKM1.1

    Gene LinkOut

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