U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    anxa13l annexin A13, like [ Danio rerio (zebrafish) ]

    Gene ID: 554118, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    anxa13lprovided by ZNC
    Official Full Name
    annexin A13, likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-310
    See related
    Ensembl:ENSDARG00000013613 AllianceGenome:ZFIN:ZDB-GENE-050522-310
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:112421
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See anxa13l in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (9821731..9842240)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (10023912..10044416)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene phosphate cytidylyltransferase 1A, choline a Neighboring gene adaptor related protein complex 2 subunit mu 1a Neighboring gene si:ch211-252f13.5 Neighboring gene abl-interactor 1b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and functional characterization of AP-2 complex subunit mu-A as a new member of antimicrobial protein. Gong Y, et al. Dev Comp Immunol, 2021 Aug. PMID 33848529
    2. A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect. Hsu CH, et al. Sci Rep, 2015 Jun 3. PMID 26039894, Free PMC Article
    3. The African coelacanth genome provides insights into tetrapod evolution. Amemiya CT, et al. Nature, 2013 Apr 18. PMID 23598338, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    annexin A13; annexin A13, like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024414.1 → NP_001019585.1  annexin A13, like

      See identical proteins and their annotated locations for NP_001019585.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095812
      UniProtKB/TrEMBL
      Q4VBH6
      Related
      ENSDARP00000025377.8, ENSDART00000018408.11
      Conserved Domains (1) summary
      pfam00191
      Location:19 → 83
      Annexin; Annexin

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      9821731..9842240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171170.4 → XP_005171227.1  annexin A13 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BIE3
      Conserved Domains (1) summary
      pfam00191
      Location:248 → 313
      Annexin; Annexin

    2. XM_021480424.1 → XP_021336099.1  annexin A13 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QEV5
      Related
      ENSDARP00000116405.1, ENSDART00000148227.3
      Conserved Domains (1) summary
      pfam00191
      Location:192 → 255
      Annexin
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools