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    Y50D7A.1 DUF295 domain-containing protein;F-box domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175193, updated on 11-Apr-2024

    Summary

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    Gene symbol
    Y50D7A.1
    Gene description
    DUF295 domain-containing protein;F-box domain-containing protein
    Locus tag
    CELE_Y50D7A.1
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y50D7A.1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    11
    Sequence:
    Chromosome: III; NC_003281.10 (292640..314508)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene General transcription and DNA repair factor IIH helicase subunit XPD Neighboring gene ncRNA Neighboring gene Transcriptional regulatory protein Neighboring gene 30S ribosomal protein S15;Peptidase metallopeptidase domain-containing protein Neighboring gene ncRNA Neighboring gene Alkyldihydroxyacetonephosphate synthase Neighboring gene ADF-H domain-containing protein Neighboring gene PDZ domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ubiquitin-like ligase-substrate adaptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DUF295 domain-containing protein;F-box domain-containing protein
    NP_001379295.1
    • Confirmed by transcript evidence
    NP_001379296.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      292640..314508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393250.1 → NP_001379295.1  F-box domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6V7QYH4
      Conserved Domains (2) summary
      PLN02153
      Location:150 → 369
      PLN02153; epithiospecifier protein
      sd00038
      Location:196 → 247
      Kelch; KELCH repeat [structural motif]

    2. NM_001393251.1 → NP_001379296.1  DUF295 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A6V7QZG4
    Nucleotide Protein
    Heading Accession and Version

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