rpl-39 Large ribosomal subunit protein eL39 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rpl-39
Gene description: Large ribosomal subunit protein eL39
Primary source: WormBase:WBGene00004453
Locus tag: CELE_C26F1.9
See related: AllianceGenome:WB:WBGene00004453
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL39 (ribosomal protein L39). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See rpl-39 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 2

Sequence:: Chromosome: V; NC_003283.11 (7775742..7776079, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

C26F1.9 (e-PCR)
- UniSTS:320779

C26F1.4 (e-PCR)
- UniSTS:320470

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Large ribosomal subunit protein eL39

NP_001379727.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

7775742..7776079 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001392549.1 → NP_001379727.1 Large ribosomal subunit protein eL39 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/Swiss-Prot

P52814

Conserved Domains (1) summary

pfam00832
Location:9 → 50

Ribosomal_L39; Ribosomal L39 protein