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    rbm-42 RNA-binding protein 42 [ Caenorhabditis elegans ]

    Gene ID: 175700, updated on 12-Jun-2024

    Summary

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    Gene symbol
    rbm-42
    Gene description
    RNA-binding protein 42
    Locus tag
    CELE_Y54H5A.3
    See related
    AllianceGenome:WB:WBGene00021901
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Orthologous to human RBM42 (RNA binding motif protein 42). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See rbm-42 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (5151907..5153229, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene T-box protein 2 Neighboring gene Protein HGH1 homolog Neighboring gene ncRNA Neighboring gene Glutamate-rich WD repeat-containing protein 1 Neighboring gene pseudo Neighboring gene putative cytosolic Fe-S cluster assembly factor oxy-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. [FeFe]-hydrogenase-like gene is involved in the regulation of sensitivity to oxygen in yeast and nematode. Fujii M, et al. Genes Cells, 2009 Apr. PMID 19335616
    2. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables snRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein 42
    NP_498090.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5151907..5153229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065689.4 → NP_498090.1  RNA-binding protein 42 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498090.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N394
      Conserved Domains (1) summary
      cd12383
      Location:197 → 279
      RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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