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    RABGGTA Rab geranylgeranyltransferase subunit alpha [ Bos taurus (cattle) ]

    Gene ID: 516619, updated on 5-Mar-2024

    Summary

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    Official Symbol
    RABGGTAprovided by VGNC
    Official Full Name
    Rab geranylgeranyltransferase subunit alphaprovided by VGNC
    Primary source
    VGNC:VGNC:33670
    See related
    BGD:BT17795; Ensembl:ENSBTAG00000018796
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RABGGTA in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (20893324..20899745)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene cell death inducing DFFA like effector b Neighboring gene NOP9 nucleolar protein Neighboring gene dehydrogenase/reductase 1 Neighboring gene transglutaminase 1 Neighboring gene TERF1 interacting nuclear factor 2 Neighboring gene guanosine monophosphate reductase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134349

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Rab geranylgeranyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein geranylgeranylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rab-protein geranylgeranyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl transferase type-2 subunit alpha
    Names
    Rab geranylgeranyltransferase alpha subunit
    geranylgeranyl transferase type II subunit alpha
    rab GG transferase alpha
    rab GGTase alpha
    rab geranyl-geranyltransferase subunit alpha
    NP_001015614.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015614.1 → NP_001015614.1  geranylgeranyl transferase type-2 subunit alpha

      See identical proteins and their annotated locations for NP_001015614.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020911
      UniProtKB/Swiss-Prot
      Q5EA80
      UniProtKB/TrEMBL
      F1MGN1
      Related
      ENSBTAP00000025020.5, ENSBTAT00000025020.6
      Conserved Domains (4) summary
      sd00031
      Location:443 → 461
      LRR_1; leucine-rich repeat [structural motif]
      pfam07711
      Location:245 → 346
      RabGGT_insert; Rab geranylgeranyl transferase alpha-subunit, insert domain
      pfam14580
      Location:468 → 562
      LRR_9; Leucine-rich repeat
      cl27590
      Location:1 → 237
      PPTA; Protein prenyltransferase alpha subunit repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      20893324..20899745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EA80.1 GenPept UniProtKB/Swiss-Prot:Q5EA80

    Gene LinkOut

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