U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC427025 Nipped-B homolog-like [ Gallus gallus (chicken) ]

    Gene ID: 427025, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LOC427025provided by CGNC
    Official Full Name
    Nipped-B homolog-likeprovided by CGNC
    Primary source
    CGNC:52967
    See related
    Ensembl:ENSGALG00010012393
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    NIPBL; SCC2W; NIPBLL
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC427025 in Genome Data Viewer
    Location:
    chromosome: W
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) W NC_052571.1 (5323305..5482338)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) W NC_059535.1 (5323305..5482338)

    Chromosome W - NC_052571.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055438 Neighboring gene ribonuclease H-like Neighboring gene uncharacterized LOC121108208 Neighboring gene WPG pseudogene Neighboring gene chromodomain helicase DNA binding protein 1W Neighboring gene uncharacterized LOC107055446 Neighboring gene zinc finger RNA-binding protein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in digestive tract development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in embryonic viscerocranium morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment of mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment of protein localization to chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cohesin loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication-born double-strand break repair via sister chromatid exchange IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Scc2-Scc4 cohesin loading complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Nipped-B homolog-like; nipped-B homolog-like
    Names
    Nipped-B homolog
    delangin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257348.1 → NP_001244277.1  Nipped-B homolog-like

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000521
      UniProtKB/TrEMBL
      A0A182C5V8, A0A8V0YFB3
      Conserved Domains (5) summary
      PTZ00121
      Location:478 → 1084
      PTZ00121; MAEBL; Provisional
      sd00044
      Location:1772 → 1800
      HEAT; HEAT repeat [structural motif]
      pfam12765
      Location:1755 → 1796
      Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
      pfam12830
      Location:2241 → 2414
      Nipped-B_C; Sister chromatid cohesion C-terminus
      cd19953
      Location:1805 → 1839
      PDS5; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052571.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5323305..5482338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046905108.1 → XP_046761064.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8

    2. XM_040655189.2 → XP_040511123.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8, A0A8V0YFB3
      Conserved Domains (5) summary
      PTZ00121
      Location:478 → 1084
      PTZ00121; MAEBL; Provisional
      sd00044
      Location:1772 → 1800
      HEAT; HEAT repeat [structural motif]
      pfam12765
      Location:1755 → 1796
      Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
      pfam12830
      Location:2241 → 2414
      Nipped-B_C; Sister chromatid cohesion C-terminus
      cd19953
      Location:1805 → 1839
      PDS5; HEAT repeat [structural motif]

    3. XM_025144549.3 → XP_025000317.1  nipped-B homolog-like isoform X2

      UniProtKB/TrEMBL
      A0A8V0YFB3, A0A8V0YME5
      Related
      ENSGALP00010017278.1, ENSGALT00010029694.1
      Conserved Domains (5) summary
      sd00044
      Location:1772 → 1800
      HEAT; HEAT repeat [structural motif]
      pfam12765
      Location:1755 → 1796
      Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
      pfam12830
      Location:2241 → 2415
      Nipped-B_C; Sister chromatid cohesion C-terminus
      cl26464
      Location:129 → 313
      Atrophin-1; Atrophin-1 family
      cl26511
      Location:478 → 1084
      Neuromodulin_N; Gap junction protein N-terminal region

    4. XM_025144548.3 → XP_025000316.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8, A0A8V0YFB3
      Conserved Domains (5) summary
      PTZ00121
      Location:478 → 1084
      PTZ00121; MAEBL; Provisional
      sd00044
      Location:1772 → 1800
      HEAT; HEAT repeat [structural motif]
      pfam12765
      Location:1755 → 1796
      Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
      pfam12830
      Location:2241 → 2414
      Nipped-B_C; Sister chromatid cohesion C-terminus
      cd19953
      Location:1805 → 1839
      PDS5; HEAT repeat [structural motif]

    5. XM_025144550.3 → XP_025000318.1  nipped-B homolog-like isoform X3

      UniProtKB/TrEMBL
      A0A3Q2UAU6, A0A8V0YFB3
      Related
      ENSGALP00010017274.1, ENSGALT00010029687.1
      Conserved Domains (5) summary
      sd00044
      Location:1562 → 1590
      HEAT; HEAT repeat [structural motif]
      pfam11029
      Location:148 → 216
      DAZAP2; DAZ associated protein 2 (DAZAP2)
      pfam12765
      Location:1545 → 1586
      Cohesin_HEAT; HEAT repeat associated with sister chromatid cohesion
      pfam12830
      Location:2031 → 2205
      Nipped-B_C; Sister chromatid cohesion C-terminus
      cl26511
      Location:336 → 874
      Neuromodulin_N; Gap junction protein N-terminal region

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059535.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5323305..5482338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046934437.1 → XP_046790393.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8

    2. XM_046934436.1 → XP_046790392.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8

    3. XM_046934438.1 → XP_046790394.1  nipped-B homolog-like isoform X2

      UniProtKB/TrEMBL
      A0A8V0YME5

    4. XM_046934435.1 → XP_046790391.1  nipped-B homolog-like isoform X1

      UniProtKB/TrEMBL
      A0A182C5V8

    5. XM_046934439.1 → XP_046790395.1  nipped-B homolog-like isoform X3

      UniProtKB/TrEMBL
      A0A3Q2UAU6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous