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    CDH23 cadherin related 23 [ Gallus gallus (chicken) ]

    Gene ID: 423718, updated on 5-Mar-2024

    Summary

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    Symbol
    CDH23provided by CGNC
    Full Name
    cadherin related 23provided by CGNC
    Primary source
    CGNC:3445
    See related
    Ensembl:ENSGALG00010020041
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    72
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (12518477..12647045)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (12564461..12692926)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene unc-5 netrin receptor B Neighboring gene solute carrier family 29 member 3 Neighboring gene V-set immunoregulatory receptor Neighboring gene proactivator polypeptide-like Neighboring gene prosaposin Neighboring gene uncharacterized LOC121111122

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-23
    Names
    cadherin-like 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      12518477..12647045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015288246.4 → XP_015143732.2  cadherin-23 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z5N9
      Conserved Domains (1) summary
      cd11304
      Location:1531 → 1628
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_421595.8 → XP_421595.5  cadherin-23 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_015288244.4 → XP_015143730.2  cadherin-23 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Related
      ENSGALP00010028548.1, ENSGALT00010048424.1
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_015288248.4 → XP_015143734.2  cadherin-23 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZBH8
      Related
      ENSGALP00010028557.1, ENSGALT00010048437.1
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    5. XM_015288249.4 → XP_015143735.2  cadherin-23 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    6. XM_015288250.4 → XP_015143736.3  cadherin-23 isoform X6

      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    7. XM_040703125.2 → XP_040559059.1  cadherin-23 isoform X7

      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    8. XM_004942047.5 → XP_004942104.2  cadherin-23 isoform X8

      Conserved Domains (1) summary
      cd11304
      Location:484 → 580
      Cadherin_repeat; Cadherin tandem repeat domain

    9. XM_040703127.2 → XP_040559061.1  cadherin-23 isoform X9

      Conserved Domains (1) summary
      cd11304
      Location:189 → 285
      Cadherin_repeat; Cadherin tandem repeat domain

    10. XM_046943351.1 → XP_046799307.1  cadherin-23 isoform X10

    RNA

    1. XR_006939750.1 RNA Sequence

    2. XR_003075564.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      12564461..12692926
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040674455.2 → XP_040530389.1  cadherin-23 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z5N9
      Conserved Domains (1) summary
      cd11304
      Location:1531 → 1628
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_040674453.2 → XP_040530387.1  cadherin-23 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_040674454.2 → XP_040530388.1  cadherin-23 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_040674456.2 → XP_040530390.1  cadherin-23 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZBH8
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    5. XM_040674457.2 → XP_040530391.1  cadherin-23 isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZCC7
      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    6. XM_040674458.2 → XP_040530392.1  cadherin-23 isoform X6

      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    7. XM_040674459.2 → XP_040530393.1  cadherin-23 isoform X7

      Conserved Domains (1) summary
      cd11304
      Location:1576 → 1673
      Cadherin_repeat; Cadherin tandem repeat domain

    8. XM_040674460.2 → XP_040530394.1  cadherin-23 isoform X8

      Conserved Domains (1) summary
      cd11304
      Location:484 → 580
      Cadherin_repeat; Cadherin tandem repeat domain

    9. XM_040674461.2 → XP_040530395.1  cadherin-23 isoform X9

      Conserved Domains (1) summary
      cd11304
      Location:189 → 285
      Cadherin_repeat; Cadherin tandem repeat domain

    10. XM_046920669.1 → XP_046776625.1  cadherin-23 isoform X10

    RNA

    1. XR_006935100.1 RNA Sequence

    2. XR_005851103.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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