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    ino80b INO80 complex subunit B [ Danio rerio (zebrafish) ]

    Gene ID: 768122, updated on 27-Mar-2024

    Summary

    Official Symbol
    ino80bprovided by ZNC
    Official Full Name
    INO80 complex subunit Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061013-69
    See related
    Ensembl:ENSDARG00000062749 AllianceGenome:ZFIN:ZDB-GENE-061013-69
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153347
    Summary
    Predicted to enable metal ion binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be part of Ino80 complex. Orthologous to human INO80B (INO80 complex subunit B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See ino80b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (7696693..7707213)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (7463324..7473844)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 3 like Neighboring gene aminoadipate aminotransferase Neighboring gene inturned planar cell polarity protein Neighboring gene tRNA methyltransferase 10B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Ino80 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of Ino80 complex IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077258.1NP_001070726.1  INO80 complex subunit B

      See identical proteins and their annotated locations for NP_001070726.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124663
      UniProtKB/TrEMBL
      Q08BL6
      Related
      ENSDARP00000085532.4, ENSDART00000091099.6
      Conserved Domains (1) summary
      pfam04438
      Location:306333
      zf-HIT; HIT zinc finger

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      7696693..7707213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)