U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zmym4.2 zinc finger MYM-type containing 4, tandem duplicate 2 [ Danio rerio (zebrafish) ]

    Gene ID: 553317, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zmym4.2provided by ZNC
    Official Full Name
    zinc finger MYM-type containing 4, tandem duplicate 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-672
    See related
    Ensembl:ENSDARG00000035821 AllianceGenome:ZFIN:ZDB-GENE-060503-672
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ZNF261; si:ch211-173p18.2; si:ch211-173p18.3
    Summary
    Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be located in nucleoplasm. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zmym4.2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (40115923..40165799)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (40528810..40578679)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene splicing factor proline/glutamine-rich Neighboring gene zinc finger MYM-type containing 4, tandem duplicate 1 Neighboring gene piggyBac transposable element-derived protein 3-like Neighboring gene immune-related, lectin-like receptor 4 Neighboring gene RNA binding motif protein 48 Neighboring gene calaxin

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation. Salisbury JP, et al. BMC Genomics, 2015 Mar 11. PMID 25879418, Free PMC Article
    2. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC553317

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044320.2 → NP_001037785.1  uncharacterized protein LOC553317

      Status: VALIDATED

      Source sequence(s)
      BX510986
      UniProtKB/TrEMBL
      A0A8M1N8Y1, F1R3K9
      Related
      ENSDARP00000049967.6, ENSDART00000049968.7
      Conserved Domains (2) summary
      pfam06467
      Location:57 → 99
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:893 → 1057
      DUF3504; Domain of unknown function (DUF3504)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      40115923..40165799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159701.4 → XP_005159758.1  uncharacterized protein LOC553317 isoform X3

      UniProtKB/TrEMBL
      A0A8M2B6T3
      Conserved Domains (4) summary
      smart00980
      Location:5 → 92
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
      pfam06467
      Location:526 → 568
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1362 → 1526
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:228 → 299
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_005159702.4 → XP_005159759.1  uncharacterized protein LOC553317 isoform X4

      UniProtKB/TrEMBL
      A0A8M2B6K8
      Conserved Domains (4) summary
      smart00980
      Location:5 → 92
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
      pfam06467
      Location:442 → 484
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1278 → 1442
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:144 → 215
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_005159704.4 → XP_005159761.1  uncharacterized protein LOC553317 isoform X6

      UniProtKB/TrEMBL
      A0A8M2B6G0
      Conserved Domains (3) summary
      pfam06467
      Location:348 → 390
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1184 → 1348
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:50 → 121
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    4. XM_005159700.4 → XP_005159757.1  uncharacterized protein LOC553317 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B6C3
      Conserved Domains (4) summary
      pfam05485
      Location:4 → 87
      THAP; THAP domain
      pfam06467
      Location:526 → 568
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1362 → 1526
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:228 → 299
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    5. XM_005159703.4 → XP_005159760.1  uncharacterized protein LOC553317 isoform X5

      UniProtKB/TrEMBL
      A0A8M2B6H7
      Conserved Domains (4) summary
      pfam05485
      Location:4 → 87
      THAP; THAP domain
      pfam06467
      Location:442 → 484
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1278 → 1442
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:144 → 215
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    6. XM_005159705.4 → XP_005159762.1  uncharacterized protein LOC553317 isoform X7

      UniProtKB/TrEMBL
      A0A8M2B6C6
      Conserved Domains (3) summary
      pfam06467
      Location:343 → 385
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1179 → 1343
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:45 → 116
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    7. XM_005159706.4 → XP_005159763.1  uncharacterized protein LOC553317 isoform X8

      UniProtKB/TrEMBL
      A0A8M2B6T5, F6NVC8
      Related
      ENSDARP00000123193.2, ENSDART00000143966.4
      Conserved Domains (3) summary
      pfam06467
      Location:333 → 375
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1169 → 1333
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:35 → 106
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    8. XM_005159699.4 → XP_005159756.1  uncharacterized protein LOC553317 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B6F4
      Conserved Domains (4) summary
      smart00980
      Location:4 → 93
      THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
      pfam06467
      Location:538 → 580
      zf-FCS; MYM-type Zinc finger with FCS sequence motif
      pfam12012
      Location:1374 → 1538
      DUF3504; Domain of unknown function (DUF3504)
      pfam13965
      Location:240 → 311
      SID-1_RNA_chan; dsRNA-gated channel SID-1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools