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    si:ch211-212k18.8 si:ch211-212k18.8 [ Danio rerio (zebrafish) ]

    Gene ID: 100001422, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-212k18.8provided by ZNC
    Official Full Name
    si:ch211-212k18.8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041111-14
    See related
    Ensembl:ENSDARG00000086421 AllianceGenome:ZFIN:ZDB-GENE-041111-14
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7136729
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:ch211-212k18.8 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19495878..19500347)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19243883..19248375)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch211-212k18.6 Neighboring gene CD68 molecule Neighboring gene si:ch211-212k18.9 Neighboring gene mannosidase, alpha, class 2B, member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100001422; uncharacterized protein si:ch211-212k18.8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386716.1 → NP_001373645.1  uncharacterized protein LOC100001422 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CR352328
      UniProtKB/TrEMBL
      A0A8M1PS59

    2. NM_001386717.1 → NP_001373646.1  uncharacterized protein LOC100001422 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CR352328
      UniProtKB/TrEMBL
      A0A8M9QHJ9, E7EYY2

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      19495878..19500347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021477745.1 → XP_021333420.1  uncharacterized protein si:ch211-212k18.8 isoform X2

      Related
      ENSDARP00000104578.1, ENSDART00000125584.4

    2. XM_021477744.1 → XP_021333419.1  uncharacterized protein si:ch211-212k18.8 isoform X1

      Related
      ENSDARP00000151038.1, ENSDART00000180514.1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      218085..222554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172222.4 → XP_005172279.1  uncharacterized protein si:ch211-212k18.8 isoform X2

      UniProtKB/TrEMBL
      E7EYY2

    2. XM_001336928.7 → XP_001336964.1  uncharacterized protein si:ch211-212k18.8 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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