slc38a5b solute carrier family 38 member 5b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc38a5bprovided by ZNC
Official Full Name: solute carrier family 38 member 5bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040718-395
See related: Ensembl:ENSDARG00000014587 AllianceGenome:ZFIN:ZDB-GENE-040718-395
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: slc38a3; zgc:92015; wu:fc31c02; wu:fc48a10
Summary: Predicted to enable L-glutamine transmembrane transporter activity and glycine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 8

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (23580850..23612428, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (23559611..23591189, complement)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc48a10 (e-PCR)
- UniSTS:189221

fc31c02.x1 (e-PCR)
- UniSTS:187955

G46973 (e-PCR)
- UniSTS:107767

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables L-glutamine transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables glycine transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in L-histidine transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in glutamine transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in glycine transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in serine transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: sodium-coupled neutral amino acid transporter 5b

Names: solute carrier family 38, member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.