Zcchc24 zinc finger CCHC-type containing 24 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zcchc24provided by RGD
Official Full Name: zinc finger CCHC-type containing 24provided by RGD
Primary source: RGD:1306164
See related: Ensembl:ENSRNOG00000040205 AllianceGenome:RGD:1306164
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1306164
Summary: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC24 (zinc finger CCHC-type containing 24). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 32.2), Muscle (RPKM 30.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 16p16

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	16	NC_086034.1 (1281350..1333278, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	16	NC_051351.1 (1274544..1326664, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	16	NC_005115.4 (1996540..2048292, complement)

Chromosome 16 - NC_086034.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger CCHC domain-containing protein 24

Names: zinc finger, CCHC domain containing 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001108394.1 → NP_001101864.1 zinc finger CCHC domain-containing protein 24

See identical proteins and their annotated locations for NP_001101864.1

Status: PROVISIONAL

Source sequence(s)

CH474067

UniProtKB/TrEMBL

A6KMH5, D3ZQ09

Related

ENSRNOP00000058600.2, ENSRNOT00000061883.3

Conserved Domains (3) summary

COG5222
Location:58 → 157

COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

pfam13696
Location:129 → 149

zf-CCHC_2; Zinc knuckle

pfam17180
Location:164 → 230

zf-3CxxC_2; Zinc-binding domain