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    ATXN7L1 ataxin 7 like 1 [ Bos taurus (cattle) ]

    Gene ID: 534448, updated on 4-Apr-2024

    Summary

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    Official Symbol
    ATXN7L1provided by VGNC
    Official Full Name
    ataxin 7 like 1provided by VGNC
    Primary source
    VGNC:VGNC:26343
    See related
    BGD:BT29473; Ensembl:ENSBTAG00000049733
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ATXN7L4
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN7L1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (46690323..46955175, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene pseudouridine synthase 7 Neighboring gene EF-hand calcium binding domain 10 Neighboring gene RAD50 interactor 1 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC107132399 Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene uncharacterized LOC132345084 Neighboring gene cadherin related family member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC127147

    General protein information

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    Preferred Names
    ataxin-7-like protein 1
    Names
    ataxin 7-like 4
    ataxin-7-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035407.2 → NP_001030484.2  ataxin-7-like protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001030484.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice pattern in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (2) has a substantially shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      BC102142, EV623524
      UniProtKB/Swiss-Prot
      Q3T136
      UniProtKB/TrEMBL
      A0A3Q1M8X5

    2. NM_001166367.1 → NP_001159839.1  ataxin-7-like protein 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BC148158, EV623524
      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:277 → 343
      SCA7; SCA7, zinc-binding domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46690323..46955175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059885641.1 → XP_059741624.1  ataxin-7-like protein 1 isoform X3

    2. XM_015468917.3 → XP_015324403.2  ataxin-7-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    3. XM_015468916.3 → XP_015324402.2  ataxin-7-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    4. XM_024990752.2 → XP_024846520.1  ataxin-7-like protein 1 isoform X8

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:242 → 308
      SCA7; zinc-binding domain

    5. XM_024990751.2 → XP_024846519.1  ataxin-7-like protein 1 isoform X7

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:277 → 343
      SCA7; zinc-binding domain

    6. XM_024990750.2 → XP_024846518.1  ataxin-7-like protein 1 isoform X6

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:277 → 343
      SCA7; zinc-binding domain

    7. XM_010804176.4 → XP_010802478.2  ataxin-7-like protein 1 isoform X11

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    8. XM_010804175.4 → XP_010802477.2  ataxin-7-like protein 1 isoform X9

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    9. XM_010804174.4 → XP_010802476.2  ataxin-7-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    10. XM_010804172.4 → XP_010802474.2  ataxin-7-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:310 → 376
      SCA7; zinc-binding domain

    11. XM_015468941.3 → XP_015324427.2  ataxin-7-like protein 1 isoform X15

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:277 → 343
      SCA7; zinc-binding domain

    12. XM_059885643.1 → XP_059741626.1  ataxin-7-like protein 1 isoform X13

    13. XM_024990753.2 → XP_024846521.1  ataxin-7-like protein 1 isoform X14

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:153 → 219
      SCA7; zinc-binding domain

    14. XM_005205355.5 → XP_005205412.2  ataxin-7-like protein 1 isoform X12

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:174 → 240
      SCA7; zinc-binding domain

    15. XM_005205358.5 → XP_005205415.2  ataxin-7-like protein 1 isoform X14

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:153 → 219
      SCA7; zinc-binding domain

    16. XM_024990757.2 → XP_024846525.1  ataxin-7-like protein 1 isoform X14

      UniProtKB/TrEMBL
      A6QM12
      Conserved Domains (1) summary
      pfam08313
      Location:153 → 219
      SCA7; zinc-binding domain

    17. XM_059885642.1 → XP_059741625.1  ataxin-7-like protein 1 isoform X10

    18. XM_015468944.3 → XP_015324430.1  ataxin-7-like protein 1 isoform X16

      UniProtKB/Swiss-Prot
      Q3T136
      UniProtKB/TrEMBL
      A0A3Q1M8X5
      Related
      ENSBTAP00000033657.5, ENSBTAT00000033748.6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3T136.2 GenPept UniProtKB/Swiss-Prot:Q3T136

    Gene LinkOut

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