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    C8h3orf18 similar to human chromosome 3 open reading frame 18 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300990, updated on 13-Apr-2024

    Summary

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    Official Symbol
    C8h3orf18provided by RGD
    Official Full Name
    similar to human chromosome 3 open reading frame 18provided by RGD
    Primary source
    RGD:1307461
    See related
    Ensembl:ENSRNOG00000015718 AllianceGenome:RGD:1307461
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307461
    Summary
    Predicted to be integral component of membrane. Orthologous to human C3orf18 (chromosome 3 open reading frame 18). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 47.1), Brain (RPKM 17.0) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C8h3orf18 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (116891081..116901122)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (108012638..108022050)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (116094046..116104257)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene cytokine inducible SH2-containing protein Neighboring gene HemK methyltransferase family member 1 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 2 Neighboring gene uncharacterized LOC134480230 Neighboring gene uncharacterized LOC120094259

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C3orf18 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106854.2 → NP_001100324.1  uncharacterized protein C3orf18 homolog

      See identical proteins and their annotated locations for NP_001100324.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6I2W8, D4A9R5
      Related
      ENSRNOP00000021188.3, ENSRNOT00000021188.6
      Conserved Domains (1) summary
      TIGR04216
      Location:13 → 84
      halo_surf_glyco; major cell surface glycoprotein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      116891081..116901122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243733.5 → XP_006243795.1  uncharacterized protein C3orf18 homolog isoform X2

      See identical proteins and their annotated locations for XP_006243795.1

      UniProtKB/TrEMBL
      A6I2W8, D4A9R5
      Conserved Domains (1) summary
      TIGR04216
      Location:13 → 84
      halo_surf_glyco; major cell surface glycoprotein

    2. XM_063265239.1 → XP_063121309.1  uncharacterized protein C3orf18 homolog isoform X1

    3. XM_063265240.1 → XP_063121310.1  uncharacterized protein C3orf18 homolog isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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