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    RAET1E-AS1 RAET1E antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100652739, updated on 10-Oct-2023

    Summary

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    Official Symbol
    RAET1E-AS1provided by HGNC
    Official Full Name
    RAET1E antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:48994
    See related
    Ensembl:ENSG00000268592 AllianceGenome:HGNC:48994
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RAET1G-AS1
    Expression
    Biased expression in kidney (RPKM 3.3), fat (RPKM 2.7) and 13 other tissues See more
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    Genomic context

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    See RAET1E-AS1 in Genome Data Viewer
    Location:
    6q25.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149863498..149919508)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (151062839..151118852)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (150184634..150240644)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene protein-L-isoaspartate (D-aspartate) O-methyltransferase Neighboring gene uncharacterized LOC107986660 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25268 Neighboring gene RAET1E-LRP11 readthrough Neighboring gene LDL receptor related protein 11 Neighboring gene uncharacterized LOC124901427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17667 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17668 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150185306-150185806 Neighboring gene chaperonin containing TCP1 subunit 7 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 9442 Neighboring gene retinoic acid early transcript 1E Neighboring gene multimerin 2 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr6:150238439-150238724 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246453-150246988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246989-150247523 Neighboring gene retinoic acid early transcript 1F (pseudogene) Neighboring gene retinoic acid early transcript 1G Neighboring gene uncharacterized LOC105378052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:150259106-150259796 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:150259797-150260487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17672 Neighboring gene UL16 binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. Prakash T, et al. PLoS One, 2010 Oct 12. PMID 20967262, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045126.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL355312, AW241754, BC016788
      Related
      ENST00000606915.1

    2. NR_045127.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs at the 5' end compared to variant 1.
      Source sequence(s)
      AL355312, AW241754, DB521065, FY211027

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      149863498..149919508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      151062839..151118852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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