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    CAPN5 calpain 5 [ Gallus gallus (chicken) ]

    Gene ID: 419086, updated on 5-Mar-2024

    Summary

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    Official Symbol
    CAPN5provided by CGNC
    Official Full Name
    calpain 5provided by CGNC
    Primary source
    CGNC:479
    See related
    Ensembl:ENSGALG00010002160
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    calpain-5
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (193134311..193184474, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (193204632..193254874, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 2 Neighboring gene myosin VIIA Neighboring gene olfactory marker protein Neighboring gene alkaline ceramidase 3 Neighboring gene tsukushi, small leucine rich proteoglycan

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      193134311..193184474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_417278.7 → XP_417278.2  calpain-5

      UniProtKB/TrEMBL
      A0A8V0X8G8
      Related
      ENSGALP00010002924.1, ENSGALT00010004853.1
      Conserved Domains (3) summary
      cd04046
      Location:514 → 639
      C2_Calpain; C2 domain present in Calpain proteins
      pfam00648
      Location:27 → 340
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:360 → 487
      Calpain_III; Calpain large subunit, domain III

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      193204632..193254874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040657600.2 → XP_040513534.1  calpain-5

      UniProtKB/TrEMBL
      A0A8V0X8G8
      Conserved Domains (3) summary
      cd04046
      Location:514 → 639
      C2_Calpain; C2 domain present in Calpain proteins
      pfam00648
      Location:27 → 340
      Peptidase_C2; Calpain family cysteine protease
      pfam01067
      Location:360 → 487
      Calpain_III; Calpain large subunit, domain III
    Nucleotide Protein
    Heading Accession and Version

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