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    LOC105369167 uncharacterized LOC105369167 [ Homo sapiens (human) ]

    Gene ID: 105369167, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC105369167
    Gene description
    uncharacterized LOC105369167
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105369167 in Genome Data Viewer
    Location:
    2p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (65725332..65754903)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (65736114..65765682)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15938 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15939 Neighboring gene uncharacterized LOC107985889 Neighboring gene keratin 18 pseudogene 33 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:65927762-65927952 Neighboring gene Sharpr-MPRA regulatory region 8914 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:66001201-66001469 Neighboring gene MPRA-validated peak3734 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:66016952-66017452 Neighboring gene long intergenic non-protein coding RNA 2934 Neighboring gene HHc2:065915 enhancer upstream of MEIS1 Neighboring gene HHc2:065944 enhancer upstream of MEIS1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:66157143-66157642 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:66184819-66185607 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:66270681-66271880 Neighboring gene VISTA enhancer hs205 Neighboring gene uncharacterized LOC107985890

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AC074391.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      65725332..65754903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_940196.2 RNA Sequence

    2. XR_940199.3 RNA Sequence

    3. XR_940197.2 RNA Sequence

    4. XR_940198.2 RNA Sequence

    5. XR_940200.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      65736114..65765682
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072151.1 RNA Sequence

    2. XR_007072149.1 RNA Sequence

    3. XR_007072147.1 RNA Sequence

    4. XR_007072148.1 RNA Sequence

    5. XR_007072150.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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