Arl13a ADP-ribosylation factor-like 13A [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Arl13aprovided by MGI
Official Full Name: ADP-ribosylation factor-like 13Aprovided by MGI
Primary source: MGI:MGI:1921698
See related: Ensembl:ENSMUSG00000052549 AllianceGenome:MGI:1921698
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Arl13; 4933422M21Rik
Summary: Predicted to enable GTP binding activity. Predicted to be involved in non-motile cilium assembly and receptor localization to non-motile cilium. Predicted to be active in ciliary membrane; motile cilium; and non-motile cilium. Orthologous to human ARL13A (ADP ribosylation factor like GTPase 13A). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward testis adult (RPKM 4.9) See more
Orthologs: human all
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Genomic context

Location:: X E3; X 55.9 cM

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (133088250..133108779)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (134187501..134208030)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in non-motile cilium assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in receptor localization to non-motile cilium	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in ciliary membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in non-motile cilium	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ADP-ribosylation factor-like protein 13A

Names: ADP-ribosylation factor-like 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_028947.1 → NP_083223.1 ADP-ribosylation factor-like protein 13A

See identical proteins and their annotated locations for NP_083223.1

Status: VALIDATED

Source sequence(s)

AK016872, AL671915, AL672215

Consensus CDS

CCDS53182.1

UniProtKB/Swiss-Prot

Q497J4, Q9D416

Related

ENSMUSP00000064416.5, ENSMUST00000064476.5

Conserved Domains (2) summary

cd04161
Location:23 → 189

Arl2l1_Arl13_like; Arl2-like protein 1 (Arl2l1) and Arl13

COG1100
Location:18 → 217

Gem1; GTPase SAR1 family domain [General function prediction only]