U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PDE4DIPP2 PDE4DIP pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 100996724, updated on 17-Jun-2024

    Summary

    Official Symbol
    PDE4DIPP2provided by HGNC
    Official Full Name
    PDE4DIP pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:55081
    See related
    AllianceGenome:HGNC:55081
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MMGL; CMYA2; PDE4DIP; Myomegalin
    Expression
    Biased expression in heart (RPKM 64.2), brain (RPKM 13.8) and 12 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PDE4DIPP2 in Genome Data Viewer
    Location:
    1p11.2
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (120469628..120665436, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (120482927..120678656, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 (PATCHES) NW_003871056.3 (541202..737010, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:144582720-144583220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144583221-144583722 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144592931-144593854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:144593855-144594776 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603371-144603926 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144603927-144604483 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:144604484-144605039 Neighboring gene NBPF member 8 Neighboring gene profilin 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1601 Neighboring gene uncharacterized LOC107985524 Neighboring gene uncharacterized LOC124904641 Neighboring gene uncharacterized LOC124904392 Neighboring gene uncharacterized LOC105378944 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1249 Neighboring gene notch 2 N-terminal like R Neighboring gene NBPF member 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • Cardiomyopathy-associated protein 2
    • Phosphodiesterase 4D-interacting protein
    • myomegalin-like
    • phosphodiesterase 4D interacting protein-like

    Clone Names

    • FLJ10757, FLJ11523, FLJ21253, DKFZp781J054, DKFZp313A0931

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144516.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC241952, AC247039, BM992506
    2. NR_144517.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has multiple differences resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC241952, AC247039, BM992506

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      120469628..120665436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791753.1 Reference GRCh38.p14 PATCHES

      Range
      80614..275929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      120482927..120678656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)