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    RPL23AP32 ribosomal protein L23a pseudogene 32 [ Homo sapiens (human) ]

    Gene ID: 56969, updated on 17-Jun-2024

    Summary

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    Official Symbol
    RPL23AP32provided by HGNC
    Official Full Name
    ribosomal protein L23a pseudogene 32provided by HGNC
    Primary source
    HGNC:HGNC:25345
    See related
    AllianceGenome:HGNC:25345
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RPL23A_9_220
    Summary
    This locus represents a transcribed pseudogene of ribosomal protein L23a. [provided by RefSeq, Aug 2011]
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    Genomic context

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    See RPL23AP32 in Genome Data Viewer
    Location:
    2p16.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (54529222..54529841)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (54523228..54523847)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (54756359..54756978)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724072 Neighboring gene spectrin beta, non-erythrocytic 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:54711535-54712045 Neighboring gene C9orf85 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:54724305-54724844 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:54725305-54725489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15759 Neighboring gene SPTBN1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11487 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11488 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11489 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15762 Neighboring gene uncharacterized LOC124906008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:54856263-54856861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15766 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15768 Neighboring gene SPTBN1 antisense RNA 2 Neighboring gene Sharpr-MPRA regulatory region 11587 Neighboring gene uncharacterized LOC105374653

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
    2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    3. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • DKFZp547I014

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002229.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092839

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      54529222..54529841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      54523228..54523847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_020217.1: Suppressed sequence

      Description
      NM_020217.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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