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    Ltb4r2 leukotriene B4 receptor 2 [ Mus musculus (house mouse) ]

    Gene ID: 57260, updated on 12-May-2024

    Summary

    Official Symbol
    Ltb4r2provided by MGI
    Official Full Name
    leukotriene B4 receptor 2provided by MGI
    Primary source
    MGI:MGI:1888501
    See related
    Ensembl:ENSMUSG00000040432 AllianceGenome:MGI:1888501
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    BLT2; LTB4-R2; LTB4-R 2; LTB4-R-2; 5830462O07Rik
    Summary
    Enables leukotriene B4 receptor activity. Acts upstream of or within keratinocyte migration and signal transduction. Located in membrane. Orthologous to human LTB4R2 (leukotriene B4 receptor 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in duodenum adult (RPKM 18.1), small intestine adult (RPKM 13.4) and 6 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ltb4r2 in Genome Data Viewer
    Location:
    14 C3; 14 28.19 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (55995379..56001523)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55757922..55764066)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase 1 Neighboring gene NOP9 nucleolar protein Neighboring gene cell death-inducing DNA fragmentation factor, alpha subunit-like effector B Neighboring gene STARR-seq mESC enhancer starr_36778 Neighboring gene leukotriene B4 receptor 1 Neighboring gene adenylate cyclase 4 Neighboring gene predicted gene, 32092

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (3)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Clone Names

    • MGC123942, MGC123943

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled peptide receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables leukotriene B4 receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables leukotriene B4 receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables leukotriene receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    leukotriene B4 receptor 2
    Names
    leukotriene B4 receptor BLT2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020490.3NP_065236.1  leukotriene B4 receptor 2

      See identical proteins and their annotated locations for NP_065236.1

      Status: VALIDATED

      Source sequence(s)
      AC098877
      Consensus CDS
      CCDS27128.1
      UniProtKB/Swiss-Prot
      Q3KP98, Q9JJL9
      Related
      ENSMUSP00000048358.5, ENSMUST00000044554.5
      Conserved Domains (2) summary
      cd14964
      Location:2347
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:21300
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      55995379..56001523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519323.3XP_006519386.1  leukotriene B4 receptor 2 isoform X1

      See identical proteins and their annotated locations for XP_006519386.1

      Conserved Domains (2) summary
      cd14964
      Location:3460
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33312
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    2. XM_006519326.3XP_006519389.1  leukotriene B4 receptor 2 isoform X2

      See identical proteins and their annotated locations for XP_006519389.1

      UniProtKB/Swiss-Prot
      Q3KP98, Q9JJL9
      Conserved Domains (2) summary
      cd14964
      Location:2347
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:21300
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    3. XM_036158769.1XP_036014662.1  leukotriene B4 receptor 2 isoform X1

      Conserved Domains (2) summary
      cd14964
      Location:3460
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33312
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily