pax1a paired box 1a [Oryzias latipes (Japanese medaka)] - Gene

Summary

Gene symbol: pax1a
Gene description: paired box 1a
See related: EnsemblRapid:ENSORLG00000017412
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Oryzias latipes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as: pax1
Orthologs: zebrafish all
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Genomic context

Location:: chromosome: 22

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
103	current	ASM223467v1 (GCF_002234675.1)	22	NC_019880.2 (16415214..16418977, complement)
102	previous assembly	ASM31367v1 (GCF_000313675.1)	22	NC_019880.1 (16159260..16162837, complement)

Chromosome 22 - NC_019880.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

pax1 plays a key role in generating the primary pattern for segmentation in the pharyngeal endoderm by regulating tbx1 and fgf3 expression.
Title: Reiterative expression of pax1 directs pharyngeal pouch segmentation in medaka.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in anatomical structure development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: paired box protein Pax-1

Names: paired box 1; paired-box transcription factor pax1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001172049.1 → NP_001165520.1 paired box protein Pax-1

See identical proteins and their annotated locations for NP_001165520.1

Status: PROVISIONAL

Source sequence(s)

AB187121

UniProtKB/TrEMBL

A0A3P9I4A4, C6KTG1, H2MSN3

Related

ENSORLP00000074992.1, ENSORLT00000101198.1

Conserved Domains (1) summary

cd00131
Location:4 → 131

PAX; Paired Box domain

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

NC_019880.2 Reference ASM223467v1 Primary Assembly

Range

16415214..16418977 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_023951243.1 → XP_023807011.1 paired box protein Pax-1 isoform X2

UniProtKB/TrEMBL

A0A3P9I4A4

Conserved Domains (1) summary

cd00131
Location:4 → 131

PAX; Paired Box domain
XM_011490118.3 → XP_011488420.1 paired box protein Pax-1 isoform X1

UniProtKB/TrEMBL

A0A3P9I4A4

Related

ENSORLP00000021775.3, ENSORLT00000021776.3

Conserved Domains (2) summary

cd00131
Location:4 → 131

PAX; Paired Box domain

pfam15991
Location:145 → 318

G_path_suppress; G-protein pathway suppressor