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    spaw southpaw [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101162532, updated on 8-Mar-2024

    Summary

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    Gene symbol
    spaw
    Gene description
    southpaw
    See related
    EnsemblRapid:ENSORLG00000006553
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See spaw in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (12553784..12555692, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (11914544..11916443, complement)

    Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene ankyrin 1, erythrocytic a Neighboring gene eukaryotic translation initiation factor 4E binding protein 1 Neighboring gene deoxycytidine kinase Neighboring gene transcobalamin II

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic expression pattern of Nodal-related genes during left-right development in medaka. Soroldoni D, et al. Gene Expr Patterns, 2007 Jan. PMID 16831571

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables type I activin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in SMAD protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nodal homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019867.2 Reference ASM223467v1 Primary Assembly

      Range
      12553784..12555692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004072367.4 → XP_004072415.1  nodal homolog

      UniProtKB/TrEMBL
      A0A3P9H7S1, H2LQ88
      Related
      ENSORLP00000008226.2, ENSORLT00000008227.3
      Conserved Domains (2) summary
      smart00204
      Location:313 → 413
      TGFB; Transforming growth factor-beta (TGF-beta) family
      pfam00688
      Location:19 → 191
      TGFb_propeptide; TGF-beta propeptide
    Nucleotide Protein
    Heading Accession and Version

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