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    LOC105374309 uncharacterized LOC105374309 [ Homo sapiens (human) ]

    Gene ID: 105374309, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105374309
    Gene description
    uncharacterized LOC105374309
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105374309 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (197477986..197479651)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200210634..200212307)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906373 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:197090769-197091337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197104842-197105355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197105356-197105868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21108 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:197121050-197122249 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:197136564-197137763 Neighboring gene NANOG hESC enhancer GRCh37_chr3:197144782-197145297 Neighboring gene uncharacterized LOC105374308 Neighboring gene MPRA-validated peak4993 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197189524-197189726 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:197205169-197206368 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:197216831-197217376 and GRCh37_chr3:197217377-197217922 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197229162-197229325 Neighboring gene Sharpr-MPRA regulatory region 5776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:197238623-197239160 Neighboring gene long intergenic non-protein coding RNA 2012 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197247683-197248388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197248389-197249094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197250741-197251240 Neighboring gene 3-hydroxybutyrate dehydrogenase 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr3:197268447-197269042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197269043-197269636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21111

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      197477986..197479651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_924902.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187534.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      79216..80889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068605.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200210634..200212307
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074129.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials