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    LOC105374308 uncharacterized LOC105374308 [ Homo sapiens (human) ]

    Gene ID: 105374308, updated on 26-Oct-2023

    Summary

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    Gene symbol
    LOC105374308
    Gene description
    uncharacterized LOC105374308
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105374308 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (197439367..197458406, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (200162475..200185299, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101926923 Neighboring gene uncharacterized LOC124906373 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:197090769-197091337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197104842-197105355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:197105356-197105868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21108 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:197121050-197122249 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:197136564-197137763 Neighboring gene NANOG hESC enhancer GRCh37_chr3:197144782-197145297 Neighboring gene MPRA-validated peak4993 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197189524-197189726 Neighboring gene uncharacterized LOC105374309 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:197205169-197206368 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:197216831-197217376 and GRCh37_chr3:197217377-197217922 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:197229162-197229325 Neighboring gene Sharpr-MPRA regulatory region 5776 Neighboring gene long intergenic non-protein coding RNA 2012

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AC128709.3, AC128709.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_189107.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC128709

    2. NR_189108.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC128709

    3. NR_189109.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC128709

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      197439367..197458406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007096242.1 RNA Sequence

    2. XR_924901.3 RNA Sequence

    3. XR_924898.3 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187534.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      101796..124619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068607.1 RNA Sequence

    2. XR_951653.4 RNA Sequence

    3. XR_007068606.1 RNA Sequence

    4. XR_951650.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      200162475..200185299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074127.1 RNA Sequence

    2. XR_007074125.1 RNA Sequence

    3. XR_007074126.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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