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    LOC5508984 cytidine deaminase [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5508984, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5508984
    Gene description
    cytidine deaminase
    Locus tag
    NEMVEDRAFT_v1g211508
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5508984 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 3 NC_064036.1 (19452528..19453257)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834275.1 (158234..158962, complement)

    Chromosome 3 - NC_064036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5508981 Neighboring gene uncharacterized LOC116616059 Neighboring gene uncharacterized LOC5508988 Neighboring gene transcription initiation factor IIB-like Neighboring gene protein fem-1 homolog B-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytidine deamination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytidine deaminase
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064036.1 Reference jaNemVect1.1

      Range
      19452528..19453257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001629525.3 → XP_001629575.1  cytidine deaminase

      See identical proteins and their annotated locations for XP_001629575.1

      UniProtKB/TrEMBL
      A7SFK0
      Conserved Domains (2) summary
      COG0295
      Location:17 → 143
      Cdd; Cytidine deaminase [Nucleotide transport and metabolism]
      cl00269
      Location:19 → 143
      cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
    Nucleotide Protein
    Heading Accession and Version

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