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    Cd80 CD80 molecule [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101841978, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cd80
    Gene description
    CD80 molecule
    See related
    EnsemblRapid:ENSMAUG00000019460
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Orthologs
    human mouse all
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    Genomic context

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    See Cd80 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429192.1 (53062022..53095840, complement)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801632.1 (2311414..2344588, complement)

    NW_024429192.1Genomic Context describing neighboring genes Neighboring gene protein O-glucosyltransferase 1 Neighboring gene translocase of inner mitochondrial membrane domain containing 1 Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene phospholipase A1 member A Neighboring gene popeye domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables coreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in T cell costimulation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to lipopolysaccharide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-lymphocyte activation antigen CD80

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281419.1 → NP_001268348.1  T-lymphocyte activation antigen CD80 precursor

      See identical proteins and their annotated locations for NP_001268348.1

      Status: PROVISIONAL

      Source sequence(s)
      AB085743
      UniProtKB/TrEMBL
      A0A3Q0CSD7, Q8BH36
      Conserved Domains (2) summary
      cd16086
      Location:36 → 140
      IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
      cd16083
      Location:143 → 233
      IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains

    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429192.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      53062022..53095840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040750265.1 → XP_040606199.1  T-lymphocyte activation antigen CD80 isoform X1

      UniProtKB/TrEMBL
      A0A3Q0CSD7, Q8BH36
      Conserved Domains (2) summary
      cd16086
      Location:36 → 140
      IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
      cd16083
      Location:143 → 233
      IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains

    2. XM_021227971.2 → XP_021083630.1  T-lymphocyte activation antigen CD80 isoform X1

      UniProtKB/TrEMBL
      A0A3Q0CSD7, Q8BH36
      Conserved Domains (2) summary
      cd16086
      Location:36 → 140
      IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
      cd16083
      Location:143 → 233
      IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains

    3. XM_040750266.1 → XP_040606200.1  T-lymphocyte activation antigen CD80 isoform X1

      UniProtKB/TrEMBL
      A0A3Q0CSD7, Q8BH36
      Conserved Domains (2) summary
      cd16086
      Location:36 → 140
      IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
      cd16083
      Location:143 → 233
      IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains

    4. XM_021227972.2 → XP_021083631.1  T-lymphocyte activation antigen CD80 isoform X1

      UniProtKB/TrEMBL
      A0A3Q0CSD7, Q8BH36
      Related
      ENSMAUP00000039762.1, ENSMAUT00000073380.1
      Conserved Domains (2) summary
      cd16086
      Location:36 → 140
      IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
      cd16083
      Location:143 → 233
      IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains
    Nucleotide Protein
    Heading Accession and Version

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