U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC108697493 paired box protein Pax-2-B-like [ Xenopus laevis (African clawed frog) ]

    Gene ID: 108697493, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC108697493
    Gene description
    paired box protein Pax-2-B-like
    Locus tag
    XELAEV_18037123mg
    See related
    EnsemblRapid:ENSXLAG00005005281
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    Pax-2; Pax-2b; pax2-b; xPax-2b
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC108697493 in Genome Data Viewer
    Location:
    chromosome: 7S
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (32158067..32227232)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (30649619..30719347)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene hypoxia inducible factor 1 subunit alpha inhibitor S homeolog Neighboring gene uncharacterized LOC108697492 Neighboring gene CUE domain containing 2 S homeolog Neighboring gene uncharacterized LOC121396137

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Xenopus Pax-2 displays multiple splice forms during embryogenesis and pronephric kidney development. Heller N, et al. Mech Dev, 1997 Dec. PMID 9486533
    2. Synergism between Pax-8 and lim-1 in embryonic kidney development. Carroll TJ, et al. Dev Biol, 1999 Oct 1. PMID 10491256
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    paired box protein Pax-2-B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      32158067..32227232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041571100.1 → XP_041427034.1  paired box protein Pax-2-B isoform X9

      UniProtKB/TrEMBL
      A0A8J1LDH0
      Related
      ENSXLAP00005015613.1, ENSXLAT00005015899.1
      Conserved Domains (1) summary
      smart00351
      Location:16 → 140
      PAX; Paired Box domain

    2. XM_018227580.2 → XP_018083069.1  paired box protein Pax-2-B isoform X2

      UniProtKB/TrEMBL
      A0A8J0TEX5

    3. XM_018227579.2 → XP_018083068.1  paired box protein Pax-2-B isoform X1

      UniProtKB/TrEMBL
      A0A8J0TE47
      Related
      ENSXLAP00005015607.1, ENSXLAT00005015893.1

    4. XM_018227582.2 → XP_018083071.1  paired box protein Pax-2-B isoform X5

      UniProtKB/TrEMBL
      A0A8J0TC59
      Related
      ENSXLAP00005015611.1, ENSXLAT00005015897.1

    5. XM_018227584.2 → XP_018083073.1  paired box protein Pax-2-B isoform X7

      UniProtKB/TrEMBL
      A0A8J0TE52, O57676

    6. XM_018227586.2 → XP_018083075.1  paired box protein Pax-2-B isoform X10

      UniProtKB/TrEMBL
      A0A8J0TFK7, O57676
      Related
      ENSXLAP00005015619.1, ENSXLAT00005015905.1

    7. XM_041571099.1 → XP_041427033.1  paired box protein Pax-2-B isoform X4

      UniProtKB/Swiss-Prot
      O57678, O57682, Q6AZQ6, Q9PUK6
      UniProtKB/TrEMBL
      A0A8J1LBX0
      Conserved Domains (2) summary
      smart00351
      Location:15 → 139
      PAX; Paired Box domain
      pfam12403
      Location:348 → 492
      Pax2_C; Paired-box protein 2 C terminal

    8. XM_018227589.2 → XP_018083078.1  paired box protein Pax-2-B isoform X12

      UniProtKB/TrEMBL
      A0A8J0TE54, O57676

    9. XM_018227581.2 → XP_018083070.1  paired box protein Pax-2-B isoform X3

      UniProtKB/TrEMBL
      A0A1L8FF43, A0A974H9V1

    10. XM_018227583.2 → XP_018083072.1  paired box protein Pax-2-B isoform X6

      UniProtKB/Swiss-Prot
      O57682

    11. XM_018227585.2 → XP_018083074.1  paired box protein Pax-2-B isoform X8

      UniProtKB/TrEMBL
      A0A8J0TEY0, O57676
      Related
      ENSXLAP00005015586.1, ENSXLAT00005015872.1

    12. XM_018227588.2 → XP_018083077.1  paired box protein Pax-2-B isoform X11

      UniProtKB/TrEMBL
      A0A8J0T663, O57676
      Related
      ENSXLAP00005015622.1, ENSXLAT00005015908.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O57682.2 GenPept UniProtKB/Swiss-Prot:O57682

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.