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    PRP21 pre-mRNA splicing factor [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4851333, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PRP21
    Gene description
    pre-mRNA splicing factor
    Locus tag
    PICST_34336
    Gene type
    protein coding
    RNA name
    pre-mRNA splicing factor
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See PRP21 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_009068.1 (1523632..1524861, complement)

    Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene transcription factor of the MADS box family Neighboring gene 40S ribosomal protein S6 Neighboring gene hypothetical protein Neighboring gene Nuclear Envelope Morphology

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009068.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    pre-mRNA splicing factor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009068.1 Reference assembly

      Range
      1523632..1524861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001387900.1 → XP_001387937.2  pre-mRNA splicing factor [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001387937.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A3GGD4
      Conserved Domains (2) summary
      pfam01805
      Location:114 → 167
      Surp; Surp module
      pfam12230
      Location:189 → 391
      PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
    Nucleotide Protein
    Heading Accession and Version

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