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    ntan1 N-terminal asparagine amidase [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145352, updated on 8-Mar-2024

    Summary

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    Official Symbol
    ntan1provided by Xenbase
    Official Full Name
    N-terminal asparagine amidaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-978464
    See related
    Ensembl:ENSXETG00000033953
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See ntan1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34314066..34327989, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28407726..28420760, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene bMERB domain containing 1 Neighboring gene posterior protein-like Neighboring gene pyridoxal-dependent decarboxylase domain containing 1 Neighboring gene uncharacterized LOC105948488 Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables protein-N-terminal asparagine amidohydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein-N-terminal asparagine amidohydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein N-terminal asparagine amidohydrolase
    NP_001120296.1
    XP_012825538.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126824.1 → NP_001120296.1  protein N-terminal asparagine amidohydrolase

      See identical proteins and their annotated locations for NP_001120296.1

      Status: PROVISIONAL

      Source sequence(s)
      BC160593
      UniProtKB/TrEMBL
      A0A6I8Q256, B1H1G1
      Related
      ENSXETP00000063401.2, ENSXETT00000060679.3
      Conserved Domains (1) summary
      pfam14736
      Location:39 → 304
      N_Asn_amidohyd; Protein N-terminal asparagine amidohydrolase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      34314066..34327989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012970084.3 → XP_012825538.2  protein N-terminal asparagine amidohydrolase isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q256, A0A8J0SMW1
      Conserved Domains (1) summary
      pfam14736
      Location:39 → 286
      N_Asn_amidohyd; Protein N-terminal asparagine amidohydrolase
    Nucleotide Protein Strain
    Heading Accession and Version

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