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    LOC103183574 E3 ubiquitin-protein ligase TRIM11 [ Callorhinchus milii (elephant shark) ]

    Gene ID: 103183574, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103183574
    Gene description
    E3 ubiquitin-protein ligase TRIM11
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callorhinchus milii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
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    Genomic context

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    See LOC103183574 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704762.1 (4776084..4781447, complement)
    100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890138.1 (994912..1007234)

    NW_024704762.1Genomic Context describing neighboring genes Neighboring gene calreticulin 3a Neighboring gene chromosome unknown C19orf44 homolog Neighboring gene E3 ubiquitin-protein ligase TRIM8-like Neighboring gene calcium homeostasis endoplasmic reticulum protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IMCB_Cmil_1.0 Primary Assembly

    Genomic

    1. NW_024704762.1 Reference IMCB_Cmil_1.0 Primary Assembly

      Range
      4776084..4781447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042342847.1 → XP_042198781.1  E3 ubiquitin-protein ligase TRIM11

      Conserved Domains (5) summary
      COG1196
      Location:185 → 313
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd19802
      Location:92 → 136
      Bbox1_TRIM8-like; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM8, TRIM16, TRIM25, TRIM29, TRIM44, TRIM47 and similar proteins
      cl00034
      Location:143 → 183
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:372 → 543
      SPRY; SPRY domain
      cl17238
      Location:13 → 58
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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