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    rag2 recombination activating gene 2 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100703785, updated on 8-Mar-2024

    Summary

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    Gene symbol
    rag2
    Gene description
    recombination activating gene 2
    See related
    Ensembl:ENSONIG00000020442
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Restricted expression toward whole embryo (RPKM 3.5) See more
    Orthologs
    human zebrafish all
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    Genomic context

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    See rag2 in Genome Data Viewer
    Location:
    chromosome: LG7
    Exon count:
    2
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (57752963..57756243, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (60348320..60351324)

    Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102080460 Neighboring gene recombination activating 1 Neighboring gene uncharacterized LOC109202957 Neighboring gene uncharacterized LOC109202956

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 2
    Names
    V(D)J recombination activating protein 2
    recombination activating 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      57752963..57756243 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003440485.5 → XP_003440533.1  V(D)J recombination-activating protein 2

      UniProtKB/TrEMBL
      A0A2U8SYI6, I3KXA1
      Related
      ENSONIP00000025747.1, ENSONIT00000025768.2
      Conserved Domains (3) summary
      pfam03089
      Location:51 → 389
      RAG2; Recombination activating protein 2
      pfam13341
      Location:417 → 495
      RAG2_PHD; RAG2 PHD domain
      pfam13415
      Location:91 → 143
      Kelch_3; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version

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