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    LOC101159768 gap junction delta-2 protein [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101159768, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101159768
    Gene description
    gap junction delta-2 protein
    See related
    EnsemblRapid:ENSORLG00000024869
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    See LOC101159768 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (16381092..16402621, complement)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (17674084..17695210, complement)

    Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 Neighboring gene transgelin Neighboring gene RAB6A, member RAS oncogene family Neighboring gene DnaJ heat shock protein family (Hsp40) member B13 Neighboring gene uncoupling protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell communication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of connexin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gap junction delta-2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019872.2 Reference ASM223467v1 Primary Assembly

      Range
      16381092..16402621 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023962269.1 → XP_023818037.1  gap junction delta-2 protein isoform X1

      UniProtKB/TrEMBL
      A0A3B3HIZ7, A0A3P9IZ65, A0A3P9JY76
      Related
      ENSORLP00000031672.1, ENSORLT00000041124.2
      Conserved Domains (1) summary
      pfam00029
      Location:3 → 285
      Connexin

    2. XM_004076492.4 → XP_004076540.1  gap junction delta-2 protein isoform X2

      UniProtKB/TrEMBL
      A0A3B3HGU9, A0A3P9IZ21, A0A3P9LMK0
      Related
      ENSORLP00000030999.1, ENSORLT00000042510.2
      Conserved Domains (3) summary
      smart00037
      Location:45 → 77
      CNX; Connexin homologues
      smart01089
      Location:198 → 264
      Connexin_CCC; Gap junction channel protein cysteine-rich domain
      pfam00029
      Location:3 → 266
      Connexin; Connexin
    Nucleotide Protein
    Heading Accession and Version

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