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Status
Public on Jul 01, 2011
Title
NimbleGen Gene Expression Danio Rerio 385k Array [071105_Zv7_EXPR]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Danio rerio Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design build Zv7 of Zebrafish, with 37,157 target genes. Each probe is replicated 12 times. The design includes random GC and other control probes. This platform has 1 array per slide.
Submission date
Jun 28, 2011
Last update date
Jan 17, 2013
Contact name
Robert L Tanguay
E-mail(s)
robert.tanguay@oregonstate.edu Phone
541-737-6514
Organization name
Oregon State University
Department
EMT
Street address
1007 ALS
City
Corvallis
State/province
OR
ZIP/Postal code
97331
Country
USA
Samples (38)
GSM750237 , GSM750238 , GSM750239 , GSM750240 , GSM750241 , GSM750242
GSM750243 ,
GSM750244 ,
GSM750245 ,
GSM750246 ,
GSM750247 ,
GSM750248 ,
GSM750249 ,
GSM750250 ,
GSM750251 ,
GSM750252 ,
GSM750253 ,
GSM750254 ,
GSM1175099 ,
GSM1175100 ,
GSM1175101 ,
GSM1175102 ,
GSM1175103 ,
GSM1175104 ,
GSM1175105 ,
GSM1175106 ,
GSM1175107 ,
GSM1175108 ,
GSM1175109 ,
GSM1175110 ,
GSM1673366 ,
GSM1673367 ,
GSM1673368 ,
GSM1673369 ,
GSM1673370 ,
GSM1673371 ,
GSM1673372 ,
GSM1673373 Series (3)
GSE30275 Surface Functionalities of Gold Nanoparticles (AuNPs) Impacts Embryonic Gene Expression Responses
GSE48335 Comparative analysis of genes regulated by Dzip1/iguana and Hedgehog in zebrafish
GSE68473 Zebrafish developmental hypoxia
Data table header descriptions ID SEQ_ID from .ngd file
GB_ACC GenBank Accession number
UNIGENE CLUSTER ID ZEBRAFISH GENE SYMBOL ZEBRAFISH GENE DESCRIPTION SPOT_ID
Data table ID GB_ACC UNIGENE CLUSTER ID ZEBRAFISH GENE SYMBOL ZEBRAFISH GENE DESCRIPTION SPOT_ID AA494792
AA494792 Dr.119676;Dr.75215
AA494800
AA494800 AA494831
AA494831 AA494944
AA494944 Dr.448
AA495014
AA495014 AA495044
AA495044 Dr.127584;Dr.129036;Dr.113202;Dr.129743;Dr.137879;Dr.125122;Dr.136134;Dr.128422;Dr.126414;Dr.134614;Dr.119271;Dr.137256;Dr.129039;Dr.133286;Dr.134637;Dr.134142;Dr.96848;Dr.129850;Dr.137504;Dr.10898;Dr.114088;Dr.135927;Dr.129620;Dr.133862;Dr.126057;Dr.111362;Dr.122166;Dr.129605;Dr.128856;Dr.118690;Dr.126856;Dr.133242;Dr.114025;Dr.134715;Dr.83577;Dr.104416;Dr.128264;Dr.130888;Dr.115756;Dr.128409;Dr.129348;Dr.126383;Dr.118058;Dr.128532;Dr.125056;Dr.114049;Dr.128049;Dr.126464;Dr.80779;Dr.105179;Dr.126465;Dr.136063;Dr.124805;Dr.124088;Dr.85717;Dr.136676;Dr.117104;Dr.122460;Dr.136129;Dr.121066;Dr.127420;Dr.129663;Dr.133003;Dr.136432;Dr.138301;Dr.113821;Dr.124739;Dr.124562;Dr.124204;Dr.138576;Dr.128484;Dr.87343;Dr.137609;Dr.129395;Dr.95184;Dr.129130;Dr.128149;Dr.80947;Dr.129013;Dr.99183;Dr.135686;Dr.103206
AA495170
AA495170 AA495418
AA495418 Dr.83122;Dr.19595
AA497192
AA497192 AA497200
AA497200 Dr.109650;Dr.75420
AA497220
AA497220 AA497257
AA497257 AA497264
AA497264 Dr.75453
AA497276
AA497276 Dr.75461
AA497284
AA497284 AA542577
AA542577 Dr.60112
AA542593
AA542593 Dr.85303;Dr.75525
AA605728
AA605728 Dr.75867
AA605863
AA605863 AA605941
AA605941
37176 2620 Kbytes .Supplementary file Size Download File type/resource GPL13784_071105_Zv7_EXPR.ndf.gz
23.2 Mb
(ftp) (http) NDF
GPL13784_071105_Zv7_EXPR.ngd.gz
1.9 Mb
(ftp) (http) NGD
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