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Platform GPL14631 Query DataSets for GPL14631
Status Public on Jan 01, 2012
Title Agilent-015757 Listeria monocytogenes array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Listeria monocytogenes
Manufacturer Agilent
Manufacture protocol Agilent 60mer
 
 
Submission date Sep 28, 2011
Last update date Jan 01, 2012
Contact name Panu Somervuo
E-mail(s) panu.somervuo@helsinki.fi
Organization name University of Helsinki
Street address Viikinkaari 4
City Helsinki
ZIP/Postal code 00014 University of Helsinki
Country Finland
 
Samples (36) GSM802631, GSM802632, GSM802633, GSM802634, GSM802635, GSM802636 
Series (1)
GSE32434 Analysis of σL dependent traits based on phenotypic and transcriptomic evaluation of the Listeria monocytogenes EGDe strain

Data table header descriptions
ID probe identifier
PROBENAME probe name
ROW probe location on array
COLUMN probe location on array
SEQUENCE probe sequence
GENOME_ACC Genbank accession id of target sequence
LOCUS locus name in JCVI CMR database
SPOT_ID
COMMON NAME annotation in JCVI CMR database
GENE SYMBOL annotation in JCVI CMR database
5 END gene 5' end in JCVI CMR database
3 END gene 3' end in JCVI CMR database
MAINROLE annotation in JCVI CMR database
SUBROLE annotation in JCVI CMR database
GO TERM annotation in JCVI CMR database
LMO lmo number based on probe BLAST against EGDe
LMO IDENTITY probe BLAST similarity% against lmo
LMO ALIGNMENT probe BLAST alignment length against lmo

Data table
ID PROBENAME ROW COLUMN SEQUENCE GENOME_ACC LOCUS SPOT_ID COMMON NAME GENE SYMBOL 5 END 3 END MAINROLE SUBROLE GO TERM LMO LMO IDENTITY LMO ALIGNMENT
1 GE_BrightCorner 164 96 --GE_BrightCorner null null null null null null null - - -
2 DarkCorner 162 96 --DarkCorner null null null null null null null - - -
3 DarkCorner 160 96 --DarkCorner null null null null null null null - - -
4 LMO2aF2416_1 158 96 TTAGTAGAGCAAGTGATTGGGAAAGAACGAACCACTATCATAGATTGGAACGAAGCGTAA AADQ00000000 LMOf6854_2422 Rrf2 family protein No Data 2417578 2417108 Unknown function General GO:0000004 GO:0005554 lmo2361 100 60
5 LMO2aF941_1 156 96 AAGATGCCTGCCCGGTTGCGAAAAGTTTAGACCCGTCGATTGAAATTAATGAGATTGTTG AADQ00000000 LMOf6854_0950 OsmC/Ohr family protein No Data 972451 973008 Unknown function General GO:0000004 GO:0005554 lmo0903 100 60
6 LMO2aF2419_1 154 96 AACTGCGAAATGGAATTGAAGGAAGCGGTAGAAGGTACTATTATTCCGATTTCATTGGCG AADQ00000000 LMOf6854_2425 RofA family protein No Data 2422424 2420910 Regulatory functions Other GO:0016563 GO:0045449 lmo2364 98.33 60
7 LMO2aF2451_1 152 96 GCAAAACTAAATGAACACGATGGTATCGCCGTTCACACATTCCTTGATGACATTGTCGGC AADQ00000000 LMOf6854_2456.1 B. subtilis YutG protein homolog ltrC No Data 2457482 2457982 Protein fate "Degradation of proteins, peptides, and glycopeptides" No Data lmo2398 100 60
8 LMO4bF1962_1 150 96 GGAGTCGATAAATTAATCGTTGCCCGCGAAACATATGAAAATTTAGTGCAAAATGATCTT AE017262 LMOf2365_1982 diaminopimelate decarboxylase lysA 2014762 2013452 Amino acid biosynthesis Aspartate family GO:0008836 GO:0009089 lmo1952 98.33 60
9 LMO2aF2326_2 148 96 TCAGTACTCAGTTTTATGAAGTAAACCCGCACACAATGATTATTTTTTTTTTTTTTTTTT AADQ00000000 LMOf6854_2333.1 "competence transcription factor ComK, N terminal part homolog comK" CTF 2347101 2347388 Regulatory functions Other No Data No Data lmo2270 100 42
10 LMO2aE63_1 146 96 GCCTTAGAAGATTATGTAGAGGATTTTGAGAATACTTCATACTCCAAGGATGTGAAAAGA AL591824 NT01LM0070 conserved hypothetical protein No Data 71064 71363 Hypothetical proteins Conserved No Data lmo0063 100 60
11 LMO2aF2471_5 144 96 GTTACAGCTTATGTGAATCGTCGTGGACACATTGGAACAGATAGCCAAATTGAATGGGCG AADQ00000000 LMOf6854_2475.1 FeS assembly protein SufD sufD 2481290 2479989 "Biosynthesis of cofactors, prosthetic groups, and carriers" Other GO:0016226 lmo2414 100 60
12 LMO4bF521_2 142 96 TAAAACCATTCAAATCTTAGGGACTGCTATTTATTCGGCTGATCAAGCAATCGCGGCTGC AE017262 LMOf2365_0529 putative transaldolase No Data 543658 544308 Energy metabolism Pentose phosphate pathway GO:0004801 GO:0006098 lmo0500 96.49 57
13 LMO2aF1968_2 140 96 ACTTTACAAAAGGCGGTCAACATATCAACTTGAACGTTCTTAACCACGACGAAGTAATCG AADQ00000000 LMOf6854_1976 formate acetyltransferase pfl-2 1977830 1980109 Energy metabolism Fermentation GO:0006113 GO:0008861 lmo1917 100 60
14 LMO4bF2327_5 138 96 GCGGATTACTTCGATTATTTTACTTGGAGCAATGGGATACACGATTAGTATTTTCTTTGT AE017262 LMOf2365_2351 putative Na+/H+ antiporter component A No Data 2409898 2412306 Transport and binding proteins Cations and iron carrying compounds GO:0006812 GO:0015385 lmo2378 94.74 57
15 LMO4bF2607_1 136 96 TGAACTAATTGCACCAATCGCTATCGAAGACGGTACTAAATTCTCTATCCGTGAAGGCGG AE017262 LMOf2365_2632 translation elongation factor Tu tuf 2678936 2677749 Protein synthesis Translation factors GO:0003746 GO:0006414 lmo2653 100 60
16 LMO4bH1604_1 134 96 GCCCAAATTAAAATAGCCTCTCAAATGGCTAGTCAGAATGAACAGACAGATAATAGTATT AADR00000000 null null null null null null null lmo2420 100 59
17 LMO2aF56_1 132 96 ATCCATGAAAGTTGCGGATTCTTCTATGAGTAAAGCTTGCTTCATGTTTGTATACGAACC AADQ00000000 LMOf6854_0059 "accessory gene regulator protein D, putative" agrD 84589 84750 Cellular processes Pathogenesis GO:0000004 GO:0005554 lmo0049 100 60
18 LMO4bF990_5 130 96 CTGCTGCAAGTGGATTAATTTTAGCCTTATTCCCCGCTTCCACAAATGATATCTTCTTCT AE017262 LMOf2365_1002 "drug resistance transporter, EmrB/QacA family" No Data 1013966 1012491 Cellular processes Toxin production and resistance GO:0006810 GO:0015238 GO:0006810 GO:0015238 lmo0981 98.18 55
19 c2a2759_6_r7 128 96 CGATTTTAACAGAAGCGCAGAAGCAACAATTGATGAAGGTAATTGCTCCGCATATTTTAC null null null null null null null lmo2652 100 60
20 LMO2aF2029_1 126 96 AATACGAAAGATCATTTCCCGAACTACAAATCCGGTTCAATGGGGCCAAAAGAAGCAGAC AADQ00000000 LMOf6854_2039 glucose-6-phosphate 1-dehydrogenase zwf 2037422 2038897 Energy metabolism Pentose phosphate pathway GO:0004345 GO:0006098 lmo1978 100 60

Total number of rows: 15744

Table truncated, full table size 3503 Kbytes.




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