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Status
Public on Jun 01, 2013
Title
UDSC M. tuberculosis H37Rv Validated Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mycobacterium tuberculosis H37Rv Manufacturer
Agilent Technologies
Manufacture protocol
Please visit http://www.chem.agilent.com
Submission date
Apr 05, 2013
Last update date
Oct 13, 2015
Contact name
madavan vasudevan
E-mail(s)
madavan.vasudevan@gmail.com Phone
+91-9845093355
Organization name
Theomics International Private Limited
Street address
Kasturi Nagar
City
Bangalore
State/province
Karnataka
ZIP/Postal code
560043
Country
India
Samples (90)
GSM1115898 , GSM1115899 , GSM1115900 , GSM1115901 , GSM1115902 , GSM1115903
GSM1115904 ,
GSM1115905 ,
GSM1115906 ,
GSM1115907 ,
GSM1115908 ,
GSM1115909 ,
GSM1115910 ,
GSM1115911 ,
GSM1115912 ,
GSM1115913 ,
GSM1115914 ,
GSM1115915 ,
GSM1115916 ,
GSM1115917 ,
GSM1115918 ,
GSM1115919 ,
GSM1115920 ,
GSM1115921 ,
GSM1115922 ,
GSM1115923 ,
GSM1115924 ,
GSM1115925 ,
GSM1508739 ,
GSM1508740 ,
GSM1508741 ,
GSM1508742 ,
GSM1508743 ,
GSM1508744 ,
GSM1508745 ,
GSM1509439 ,
GSM1509440 ,
GSM1509441 ,
GSM1509442 ,
GSM1509443 ,
GSM1509444 ,
GSM1509445 ,
GSM1509446 ,
GSM1509447 ,
GSM1509448 ,
GSM1509449 ,
GSM1509450 ,
GSM2443546 ,
GSM2443547 ,
GSM2443548 ,
GSM2443549 ,
GSM2443550 ,
GSM2443551 ,
GSM2443552 ,
GSM2443553 ,
GSM2443554 ,
GSM2443555 ,
GSM2443556 ,
GSM2443557 ,
GSM2443558 ,
GSM2596916 ,
GSM2596917 ,
GSM2596918 ,
GSM2596919 ,
GSM2596920 ,
GSM2596921 ,
GSM2596922 ,
GSM2596923 ,
GSM2596924 ,
GSM2596925 ,
GSM2596926 ,
GSM2596927 ,
GSM2596928 ,
GSM2596929 ,
GSM2596930 ,
GSM2596931 ,
GSM3131538 ,
GSM3131539 ,
GSM3131540 ,
GSM3131541 ,
GSM3131542 ,
GSM3131543 ,
GSM5417006 ,
GSM5417007 ,
GSM5417008 ,
GSM5417009 ,
GSM5417010 ,
GSM5417011 ,
GSM5417012 ,
GSM5417013 Series (6)
GSE45811 A validated microarray platform for Mycobacterium tuberculosis
GSE61579 Transcriptomic analysis of Mtb H37Rv and MtbΔwhiB3 at pH 4.5
GSE61618 Transcriptomic analysis of Mtb H37Rv on treatment with ATD-3169 (Redox generating compound)
GSE93091 Transcriptomic analysis of Mtb H37Rv and MtbΔwhiB4 on treatment to 10X Augmentin (AG) i.e. combination of 100 µg/ml of Amoxicillin and 8 µg/ml of Clavulanate and lower Augmentin doses at 1X and 5X
GSE114045 Transcriptomic analysis of Wt Mtb H37Rv and WhiB4 Complemented strains on treatment with 0.25 mM Cumene hydroperoxide (CHP) for 2 h at 37°C.
GSE179403 Transcriptomic analysis of Wild type M.tb H37Rv, HigB KO M.tb H37Rv and complemented Hig B KO M.tb H37Rv
Relations Alternative to
GPL21002 (PROBE ID version)
Data table header descriptions ID ORF Gene
CONTROL TYPE PROBE ID GENE ID GENE START POSITION GENE END POSITION GENE NAME GENE SYMBOL ENTREZ GENE ID FUNCTIONAL CLASS GENE LENGTH SEQUENCE SPOT_ID
Data table ID ORF CONTROL TYPE PROBE ID GENE ID GENE START POSITION GENE END POSITION GENE NAME GENE SYMBOL ENTREZ GENE ID FUNCTIONAL CLASS GENE LENGTH SEQUENCE SPOT_ID 1
POSITIVE
GE_BrightCorner
GE_BrightCorner
--POSITIVE CONTROL
2
POSITIVE
DarkCorner
DarkCorner
--POSITIVE CONTROL
3
POSITIVE
DarkCorner
DarkCorner
--POSITIVE CONTROL
4
Rv1568 VALID FEATURE
BT_Specific_MTBRv_GE_0001765
Rv1568
1775392
1776702
adenosylmethionine-8-amino-7-oxononanoate
bioA
886343
I.G.1
1311
ACATCTGCCGCCGTTACGAGGTGCTGCTGATCTTCGATGAGATCG
5
Rv0695 VALID FEATURE
BT_Specific_MTBRv_GE_0000638
Rv0695
794715
795467
conserved hypothetical protein
Rv0695
888314
V
753
AACGATCTCTATCGGCACTGAAGCCCTGACGATGTTGCTCGTGGAGTAT
6
Rv0015c VALID FEATURE
BT_Linker_Specific_MTBRv_GE_0002631
Rv0015c
17470
18762
serine-threonine protein kinase
pknA
885953
I.J.3
1293
TATCCTACAGCGACGTCTATTCACTGGGAGTTGTTGGGTATGAAGCGGTTTCGGGTAAAC
7
Rv2257c VALID FEATURE
BT_Specific_MTBRv_GE_0001388
Rv2257c
2530007
2530822
hypothetical protein
Rv2257c
888069
VI
816
AATGACTGGGGGCTGGGCTTTGAGATCAGGAATTCGAAATCGCCC
8
Rv2777c VALID FEATURE
BT_Specific_MTBRv_GE_0000726
Rv2777c
3084487
3085554
hypothetical protein
Rv2777c
887833
VI
1068
AACTATACTTGCCAACACGTGATGTCTACTGGGGCGACATGTCGGGCATTTATGTAAA
9
Rv0023 VALID FEATURE
BT_Specific_MTBRv_GE_0016477
Rv0023
27595
28362
putative transcriptional regulator
Rv0023
887062
I.J.1
768
CATTCGCGCACTTCGCGAGTCGCGTGACTGGTCCCTCGCGGACCTG
10
Rv0148 VALID FEATURE
BT_Specific_MTBRv_GE_0001612
Rv0148
174833
175690
steroid dehydrogenase
Rv0148
886845
I.B.7
858
ACAAGATGTCGTTCGAGAATTGGGACGCCGTGCTTAAGGTGCACCTTTAT
11
Rv3105c VALID FEATURE
BT_Specific_MTBRv_GE_0009089
Rv3105c
3472770
3473903
peptide chain release factor 2
prfB
888820
II.A.6
1134
CAATCGGTGAACACGACAGACTCAGCGGTGCGGCTCACCCACATTC
12
Rv3257c VALID FEATURE
BT_Specific_MTBRv_GE_0006955
Rv3257c
3637313
3638707
phosphomannomutase
manB
888699
I.A.1
1395
CAACCGGATTGTCAGTATTGATCACCTCGATGGCGTGACCGTTGACTTAGG
13
Rv1887 VALID FEATURE
BT_Specific_MTBRv_GE_0000484
Rv1887
2136258
2137397
hypothetical protein
Rv1887
885247
VI
1140
AACAGGATCGGAATGACAGCCAGCCGATCACTCGAGTGCTAGAGCACATAC
14
Rv0373c VALID FEATURE
BT_Linker_Specific_MTBRv_GE_0001350
Rv0373c
449407
451803
putative CO dehydrogenase gene cluster
Rv0373c
886472
I.B.7
2397
TATCCTAATCTATTGCGGCCCAACCAGTTTCCGTATCAGAGCAAGACTGGTTGGGTGTAC
15
Rv3336c VALID FEATURE
BT_Specific_MTBRv_GE_0000962
Rv3336c
3722622
3723629
tryptophanyl tRNA synthase
trpS
887559
II.A.3
1008
AAGATGACCGCCAAAATCTACGATCTACAAGACCCGACGTCAAAGATGAGCAAATCG
16
Rv0609 VALID FEATURE
BT_Operon_MTBRv_GE_0036
Rv0609
703486
703884
conserved hypothetical protein
Rv0609
887896
V
399
ATGACGAGCGAGGGCTGCCGGCGTGATCGTCGACACGTCGGCGATCATCG
17
Rv3698 VALID FEATURE
BT_Specific_MTBRv_GE_0009392
Rv3698
4140492
4142018
hypothetical protein
Rv3698
885565
VI
1527
CAATTACATTTGCAGCTAGCACCGGCGGATTTTCCGGCTAACTGGAATGC
18
Rv3615c VALID FEATURE
BT_Specific_MTBRv_GE_0003477
Rv3615c
4054814
4055122
conserved hypothetical protein
Rv3615c
885770
V
309
ATCACTCACGGTCCGTACTGCTCACAGTTCAACGACACGTTAAATGTGTACTTGA
19
Rv2116 VALID FEATURE
BT_Specific_MTBRv_GE_0002956
Rv2116
2376571
2377137
lipoprotein
lppK
886029
II.C.1
567
AGTTCACGTTTCCCATGGAATTCGTGTCCTTCAAGGGCGGCTGGCAATTGTCTAG
20
Rv0249c VALID FEATURE
BT_Linker_Specific_MTBRv_GE_0005633
Rv0249c
300837
301655
probable membrane anchor protein
Rv0249c
886671
II.C.5
819
TATCCATTTCTACATCATGCTGGTGGCCAGTGGCAGCATCACAGATCTCAGATTTATTGG
15744 2712 Kbytes .Supplementary data files not provided
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