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| Status |
Public on Dec 16, 2005 |
| Title |
Zf_16.5K_oligo_COMP_v3Apx |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Danio rerio |
| Manufacturer |
Genome Institute of Singapore |
| Manufacture protocol |
See GISMADB homepage
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| Support |
glass |
| Coating |
poly-L-Lysine |
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| Description |
This set includes 16416 oligo probes (60 mers) designed by Compugen-Sigma.
Spotted long oligonucleotide array on glass
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| Web link |
http://gismadb.gis.a-star.edu.sg
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| Contributor(s) |
Miller LD |
| Submission date |
Aug 03, 2005 |
| Last update date |
Dec 16, 2005 |
| Contact name |
Siew Hong Lam |
| E-mail(s) |
dbslsh@nus.edu.sg
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| Phone |
(65)- 68742860
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| Fax |
(65)-67792486
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| Organization name |
National University of Singapore
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| Department |
Biological Sciences
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| Street address |
14 Science Drive 4
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| City |
Singapore |
| ZIP/Postal code |
117543 |
| Country |
Singapore |
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| Samples (224)
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GSM67011, GSM67012, GSM67013, GSM67014, GSM67015, GSM67016
GSM67017, GSM67018, GSM67019, GSM67020, GSM67021, GSM67022, GSM67023, GSM67024, GSM67025, GSM67026, GSM67027, GSM67028, GSM67029, GSM67030, GSM67031, GSM67032, GSM67033, GSM67034, GSM80309, GSM80310, GSM80311, GSM80312, GSM80313, GSM80314, GSM80315, GSM80316, GSM80317, GSM80318, GSM80319, GSM80320, GSM80321, GSM80322, GSM80323, GSM80324, GSM80325, GSM80326, GSM80327, GSM80328, GSM211578, GSM211579, GSM211580, GSM211581, GSM211582, GSM211583, GSM211584, GSM211585, GSM211586, GSM211587, GSM211588, GSM211589, GSM211590, GSM211591, GSM211592, GSM211593, GSM211594, GSM211595, GSM211596, GSM211597, GSM211598, GSM211599, GSM211600, GSM211601, GSM211602, GSM211603, GSM211604, GSM211605, GSM211606, GSM211607, GSM211608, GSM211609, GSM211610, GSM211611, GSM211612, GSM211613, GSM211614, GSM211615, GSM211616, GSM211617, GSM211618, GSM211619, GSM467498, GSM467499, GSM467500, GSM467501, GSM467502, GSM467503, GSM467504, GSM467505, GSM467506, GSM467507, GSM467508, GSM467509, GSM467510, GSM467511, GSM467512, GSM467513, GSM467514, GSM467515, GSM467516, GSM467517, GSM467518, GSM467519, GSM467520, GSM467521, GSM686149, GSM686150, GSM686151, GSM686152, GSM686153, GSM686154, GSM686155, GSM686156, GSM686157, GSM686158, GSM744057, GSM744058, GSM744059, GSM744060, GSM744061, GSM744062, GSM744063, GSM744064, GSM744065, GSM744066, GSM744067, GSM744068, GSM744069, GSM744070, GSM744071, GSM744072, GSM744073, GSM744074, GSM744075, GSM744076, GSM744077, GSM744078, GSM744079, GSM744080, GSM744105, GSM744106, GSM744107, GSM744108, GSM744109, GSM744110, GSM744111, GSM744112, GSM744113, GSM744114, GSM744115, GSM744116, GSM744117, GSM744118, GSM744119, GSM744120, GSM744121, GSM744122, GSM744123, GSM744124, GSM744125, GSM744126, GSM744127, GSM744128, GSM744129, GSM744130, GSM744131, GSM744132, GSM744133, GSM744134, GSM744135, GSM744136, GSM744137, GSM744138, GSM744139, GSM744140, GSM744213, GSM744214, GSM744215, GSM744216, GSM744217, GSM744218, GSM744219, GSM744220, GSM744221, GSM744222, GSM744223, GSM744224, GSM744231, GSM744232, GSM744233, GSM744234, GSM744235, GSM744236, GSM744237, GSM744238, GSM744239, GSM744240, GSM744241, GSM744242, GSM1020289, GSM1020290, GSM1020291, GSM1020292, GSM1020293, GSM1020294, GSM1020295, GSM1020296, GSM1020297, GSM1020298, GSM1020299, GSM1020300, GSM1020301, GSM1020302, GSM1020303, GSM1020304, GSM1020305, GSM1020306, GSM1020307, GSM1020308
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| Series (13)
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| GSE3048 |
Trancriptome Kinetics of Arsenic-induced Adaptive Response in Zebrafish Liver. |
| GSE3519 |
Molecular Conservation of Zebrafish and Human Liver Tumors. |
| GSE8522 |
RNA from 3 d and 2 d old embryos of mibta52b, mibm132 and mibtfi91, and RNA from 3 d, 2d and 1 d old embryos of mibta52b |
| GSE18861 |
Mercury-Induced Hepatotoxicity in Zebrafish |
| GSE27707 |
Zebrafish: Estrogen induced gene expression |
| GSE30055 |
Toxicogenomics and phenotypic characterization of adult male zebrafish liver treated with chloroaniline |
| GSE30057 |
Toxicogenomics and phenotypic characterization of adult female zebrafish liver treated with chloroaniline |
| GSE30058 |
Toxicogenomics and phenotypic characterization of adult male zebrafish liver treated with nitrophenol |
| GSE30060 |
Toxicogenomics and phenotypic characterization of adult female zebrafish liver treated with nitrophenol |
| GSE30062 |
Toxicogenomics and phenotypic characterization of adult female zebrafish liver treated with arsenic [As(V)] |
| GSE41622 |
Toxicogenomics and phenotypic characterization of adult female zebrafish liver treated with cadmium (II) |
| GSE41623 |
Toxicogenomics and phenotypic characterization of adult male zebrafish liver treated with cadmium (II) |
| GSE41625 |
Toxicogenomics and phenotypic characterization of adult female and zebrafish liver treated with cadmium (II) |
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| Data table header descriptions |
| ID |
Clone id |
| GB_ACC |
GenBank accession number of sequence used to design oligonucleotide probe |
| GENE_NAME |
Descriptive gene name, from UniGene Build |
| UNIGENE |
UniGene Cluster ID, build |
| GENE_SYMBOL |
Gene symbol, from UniGene Build |
| BLOCK |
Block within array |
| ROW |
Row within array |
| COLUMN |
Column within array |
| SPOT_ID |
identifier for spots without an entry in the GB_ACC column |
| Data table |
| ID |
GB_ACC |
GENE_NAME |
UNIGENE |
GENE_SYMBOL |
BLOCK |
ROW |
COLUMN |
SPOT_ID |
| 5269516 |
AF025305 |
bactin2 |
1109 |
bactin2 |
45 |
19 |
19 |
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| 5269517 |
AF025305 |
bactin2 |
1109 |
bactin2 |
41 |
19 |
19 |
|
| 5269518 |
AF030031 |
deltaA |
30326 |
dla |
37 |
19 |
19 |
|
| 5269519 |
AJ317957 |
crystallin, beta B1 |
14667 |
crybb1 |
33 |
19 |
19 |
|
| 5269520 |
AF146429 |
deltaC |
8086 |
dlc |
29 |
19 |
19 |
|
| 5269521 |
AB035276 |
vertebrate ancient long opsin |
8164 |
valop |
25 |
19 |
19 |
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| 5269522 |
AF006488 |
deltaB |
574 |
dlb |
21 |
19 |
19 |
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| 5269523 |
AJ290390 |
beta-carotene 15, 15'-dioxygenase |
12383 |
bcdo1 |
17 |
19 |
19 |
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| 5269524 |
L27585 |
sonic hedgehog |
36 |
shh |
13 |
19 |
19 |
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| 5269525 |
AF067532 |
paired box gene 2a |
10 |
pax2a |
9 |
19 |
19 |
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| 5269526 |
AB006086 |
spondin 1a |
564 |
spon1a |
5 |
19 |
19 |
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| 5269527 |
AF210643 |
retinal degradation slow 2 |
21015 |
rds2 |
1 |
19 |
19 |
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| 5269528 |
AB006087 |
spondin 1b |
565 |
spon1b |
45 |
19 |
18 |
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| 5269529 |
AF210644 |
retinal degradation slow 4 |
12204 |
rds4 |
41 |
19 |
18 |
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| 5269530 |
AF252546 |
calcium/calmodulin-dependent serine protein kinase |
4363 |
cask |
37 |
19 |
18 |
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| 5269531 |
AY050506 |
phosphodiesterase 6G, cGMP-specific, rod, gamma |
9829 |
pde6g |
33 |
19 |
18 |
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| 5269532 |
AF116539 |
invariant chain-like protein 2 |
7780 |
iclp2 |
29 |
19 |
18 |
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| 5269533 |
AB025312 |
extra-ocular rhodopsin |
8099 |
exorh |
25 |
19 |
18 |
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| 5269534 |
AF260240 |
claudin 7 |
20610 |
cldn7 |
21 |
19 |
18 |
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| 5269535 |
AF109372 |
opsin 1 (cone pigments), short-wave-sensitive 1 |
8097 |
opn1sw1 |
17 |
19 |
18 |
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Total number of rows: 16512
Table truncated, full table size 1455 Kbytes.
| Supplementary data files not provided |
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