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| Status |
Public on Jul 14, 2006 |
| Title |
FHCRC Human Prostate PEDB cDNA Array v4 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
FHCRC Array Facility |
| Manufacture protocol |
DNA spotted onto polylysine-coated glass microscope slides
|
| Support |
glass |
| Coating |
polylysine |
| |
|
| |
|
| Contributor(s) |
Nelson PS, Coleman I, Abbott DE, Dumpit R |
| Submission date |
Jun 01, 2006 |
| Last update date |
Jan 17, 2013 |
| Contact name |
Denise Mauldin |
| E-mail(s) |
dmauldin@fhcrc.org
|
| Phone |
2066673480
|
| Fax |
2066672917
|
| URL |
http://www.pedb.org
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Human Biology
|
| Lab |
Peter Nelson
|
| Street address |
1100 Fairview Ave N D4-100
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Samples (31)
|
GSM115759, GSM115760, GSM115761, GSM115762, GSM115763, GSM115764
GSM115765, GSM115766, GSM115767, GSM115768, GSM115770, GSM115771, GSM115772, GSM115773, GSM115774, GSM115775, GSM115776, GSM115777, GSM115778, GSM115779, GSM115780, GSM115781, GSM115782, GSM115783, GSM115784, GSM115785, GSM115786, GSM115787, GSM115788, GSM115789, GSM115790
|
| Series (1) |
| GSE5132 |
Molecular Correlate to Gleason Grade in Prostate Adenocarcinoma |
|
| Data table header descriptions |
| ID |
Feature ID for each spot, one per spot on the array. |
| MetaCol |
Column referring to overall organization |
| MetaRow |
Row referring to overall organization |
| Column |
Column within metastructure |
| Row |
Row within metastructure |
| Biosequence Type |
type of clone |
| Strand Type |
strandedness |
| GB_ACC |
Accession number |
| SPOT_ID |
|
| UNIGENE |
Unigene Cluster from Unigene 187 |
| Reporter Usage |
Reporter role [control or experimental] |
| Control Type |
Type of Control |
| PARRAY Spot ID |
Spot ID, one per gene on array. |
| Designation |
Reporter type |
| Related Gene Symbol |
Gene symbol of Unigene Cluster |
| Description |
Gene description |
| GENE |
Entrez GENE ID |
| Chromosome |
Chromosome Location |
| Data table |
| ID |
MetaCol |
MetaRow |
Column |
Row |
Biosequence Type |
Strand Type |
GB_ACC |
SPOT_ID |
UNIGENE |
Reporter Usage |
Control Type |
PARRAY Spot ID |
Designation |
Related Gene Symbol |
Description |
GENE |
Chromosome |
| 89663 |
1 |
1 |
1 |
1 |
cdna clone |
double |
BC005306 |
|
546239 |
Experimental |
|
P:1 |
Gene |
AZGP1 |
Alpha-2-glycoprotein 1 zinc |
563:564 |
7q22.1 |
| 89664 |
1 |
1 |
2 |
1 |
cdna clone |
double |
AI744864 |
|
406510 |
Experimental |
|
P:5 |
Gene |
ATP5B |
ATP synthase H+ transporting mitochondrial F1 complex beta polypeptide |
506 |
12q13.13 |
| 89665 |
1 |
1 |
3 |
1 |
cdna clone |
double |
CN394166 |
|
8372 |
Experimental |
|
P:9 |
Gene |
UQCR |
Ubiquinol-cytochrome c reductase 6.4kDa subunit |
10975 |
19p13.3 |
| 89666 |
1 |
1 |
4 |
1 |
cdna clone |
double |
BI492672 |
|
479208 |
Experimental |
|
P:13 |
Gene |
FBXL5 |
F-box and leucine-rich repeat protein 5 |
26234 |
4p15.33 |
| 89667 |
1 |
1 |
5 |
1 |
cdna clone |
double |
BI492672 |
|
479208 |
Experimental |
|
P:17 |
Gene |
FBXL5 |
F-box and leucine-rich repeat protein 5 |
26234 |
4p15.33 |
| 89668 |
1 |
1 |
6 |
1 |
cdna clone |
double |
CR982123 |
|
520048 |
Experimental |
|
P:21 |
Gene |
HLA-DRA |
Major histocompatibility complex class II DR alpha |
3122 |
6p21.3 |
| 89669 |
1 |
1 |
7 |
1 |
cdna clone |
double |
BU165091 |
|
512525 |
Experimental |
|
P:97 |
Gene |
RPS17 |
Ribosomal protein S17 |
6218:402057 |
15q |
| 89670 |
1 |
1 |
8 |
1 |
cdna clone |
double |
AK130815 |
|
171189 |
Experimental |
|
P:101 |
Gene |
AHR |
Aryl hydrocarbon receptor |
196 |
7p15 |
| 89671 |
1 |
1 |
9 |
1 |
cdna clone |
double |
DR421657 |
|
558390 |
Experimental |
|
P:105 |
Gene |
RPS24 |
Ribosomal protein S24 |
6229 |
10q22-q23 |
| 89672 |
1 |
1 |
10 |
1 |
cdna clone |
double |
BQ227048 |
|
446427 |
Experimental |
|
P:109 |
Gene |
OAZ1 |
Ornithine decarboxylase antizyme 1 |
4946 |
19p13.3 |
| 89673 |
1 |
1 |
11 |
1 |
cdna clone |
double |
BM993300 |
|
497039 |
Experimental |
|
P:113 |
Gene |
LAMC1 |
Laminin gamma 1 (formerly LAMB2) |
3915 |
1q31 |
| 89674 |
1 |
1 |
12 |
1 |
cdna clone |
double |
AC009167 |
|
|
Experimental |
|
P:117 |
Gene |
|
Homo sapiens chromosome 16 clone RP11-82O18 complete sequence |
|
|
| 89675 |
1 |
1 |
13 |
1 |
cdna clone |
double |
BC005157 |
|
517962 |
Experimental |
|
P:193 |
Gene |
TCTA |
T-cell leukemia translocation altered gene |
6988 |
3p21 |
| 89676 |
1 |
1 |
14 |
1 |
cdna clone |
double |
|
Failed Sequencing |
|
Experimental |
|
P:197 |
Gene |
|
Failed Sequencing |
|
|
| 89677 |
1 |
1 |
15 |
1 |
cdna clone |
double |
CA307243 |
|
489615 |
Experimental |
|
P:201 |
Gene |
PBEF1 |
Pre-B-cell colony enhancing factor 1 |
10135 |
7q22.3 |
| 89678 |
1 |
1 |
16 |
1 |
cdna clone |
double |
AB011165 |
|
282678 |
Experimental |
|
P:205 |
Gene |
THRAP1 |
Thyroid hormone receptor associated protein 1 |
9969 |
17q22-q23 |
| 89679 |
1 |
1 |
17 |
1 |
cdna clone |
double |
|
Failed Sequencing |
|
Experimental |
|
P:209 |
Gene |
|
Failed Sequencing |
|
|
| 89680 |
1 |
1 |
18 |
1 |
cdna clone |
double |
|
Failed Sequencing |
|
Experimental |
|
P:213 |
Gene |
|
Failed Sequencing |
|
|
| 89681 |
1 |
1 |
19 |
1 |
cdna clone |
double |
AK027893 |
|
408427 |
Experimental |
|
P:289 |
Gene |
COMMD7 |
COMM domain containing 7 |
149951 |
20q11.21 |
| 89682 |
1 |
1 |
20 |
1 |
cdna clone |
double |
AL050094 |
|
436405 |
Experimental |
|
P:293 |
Gene |
IDH3B |
Isocitrate dehydrogenase 3 (NAD+) beta |
3420 |
20p13 |
Total number of rows: 15488
Table truncated, full table size 1923 Kbytes.
| Supplementary data files not provided |
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