NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL6484 Query DataSets for GPL6484
Status Public on Mar 31, 2008
Title NimbleGen Homo sapiens HG18 RefSeq promoter array_386K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen Systems
Manufacture protocol http://www.nimblegen.com/products/chip/index.html
Catalog number C4226-00-01
 
 
Submission date Feb 12, 2008
Last update date Mar 31, 2008
Contact name Vitalina Komashko
E-mail(s) vitalina.komashko@sagebase.org
Organization name Sage Bionetworks
Street address 1100 Fairview Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (11) GSM265487, GSM344309, GSM344311, GSM344314, GSM344319, GSM344323 
Series (2)
GSE10504 Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
GSE13706 Genome-Wide Screen of Promoter Methylation Identifies Novel Markers for Tumor Development in Melanoma

Data table header descriptions
ID
RANGE_START PROBE_START; probe startpoint in genbank chromosome (relative to the RANGE_GB accession)
RANGE_END PROBE_END; probe endpoint in genbank chromosome (relative to the RANGE_GB accession)
REFSEQ_ID NCBI/UCSC RefSeq ID
SEQUENCE PROBE_SEQ; probe sequence
CHROMOSOME chromsome number
RANGE_GB ACCESSION.VERSION
RANGE_STRAND + or -

Data table
ID RANGE_START RANGE_END REFSEQ_ID SEQUENCE CHROMOSOME RANGE_GB RANGE_STRAND
CHR10:100017497-100020197_CHR10P100017497 100017497 100017547 NM_032211 CAGCCCTGGTTCGTTGTCCCCCAAGTCGTAAGTGTGACATCTGAACCCGC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100017597 100017597 100017647 NM_032211 CACGGCGTGTACACAAACAAGACACGCAGGCACCCCTGAGGCCTGGGCGC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100017697 100017697 100017747 NM_032211 AGTTGGAAGCAGGTTGGTGAGCGACTGGAGGGCCGGGCTGAGGGTCCAAG CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100017797 100017797 100017847 NM_032211 CAGACTCACAGAGAGACAGAAGGACAGATGGGACAGCAAGAGGCAGACCA CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100017897 100017897 100017947 NM_032211 TCCGGGGCTGGGCGGGCGCCGCGGCGGAGCAGCGCTAACGGGCTCCCTCC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100017997 100017997 100018047 NM_032211 CCCGAGCTGGCCGCGGAGGAGGCCCCGCAGGCCCCGCCCCGGGCGGGCCT CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018097 100018097 100018147 NM_032211 ACACAGGCCAGGTGGCGGGGGCGCCCAGCCGCAGCCGGCGGGGCCGGGAA CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018197 100018197 100018247 NM_032211 GAGCTCTCGGGAAAGGGCGGCGCTGGGCCCGCGGCTGTTTTGCAGGGAGG CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018297 100018297 100018347 NM_032211 AACAAGGTAATGACGCCCACCTAGAGTCCCAGTCTGTGAGTCCTGGTGGG CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018397 100018397 100018447 NM_032211 CAGGGGCCGAATCTCACGAGCTCGGTCACTTAGGACAATGTAGACGCCCT CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018497 100018497 100018547 NM_032211 CGGTGCTCTCCTGCAGGAACAGGCGAGTCACCCAGAGTTTACTGAATACC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018597 100018597 100018647 NM_032211 TGCAGCTGGGAACACTGAGCCCCAGGCGACATAACTTGCTCCTCCAGGCA CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018697 100018697 100018747 NM_032211 GGCCCTTGTCAGACTCACGGGAGGAGGGTGTTAGTGCAGGGAGCAGGGAC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018797 100018797 100018847 NM_032211 CTGAACTGAGCACCTAGGTGCCTGAACCCCAGTCCAAGCCCCCAGTTTCT CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018897 100018897 100018947 NM_032211 TGGGCAGAGGGTTCCAGCCTCCCGGTTTCCTCCCTAGGCCCACAGCTGCC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100018997 100018997 100019050 NM_032211 GTTCATTCATCCCACAAGCCTTTATTGATTTTCTCCTACATGCTAGACAGGGT CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100019097 100019097 100019147 NM_032211 GGCAGATGTGCAAGTAAGAATAAGCCTGGACAGGCAGAGTGTGATAGAGC CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100019197 100019197 100019247 NM_032211 TGACCCTGCTGCCAGGGACCTGCCATCCACTCCTGGCTGCCCGTGTCCAA CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100019297 100019297 100019347 NM_032211 CCATGATGAATCAGCAGGAAAGAATGCTCCCAGCCTCGGGTCAGTGGCAG CHR10 NC_000010.9 +
CHR10:100017497-100020197_CHR10P100019397 100019397 100019447 NM_032211 CAGGTATGCCTAAGCCCTCTCCTAGGGCCCAGCCACCTCTCATGCTGAGC CHR10 NC_000010.9 +

Total number of rows: 386230

Table truncated, full table size 55078 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6484.ndf.gz 24.0 Mb (ftp)(http) NDF
GPL6484.ngd.gz 372.9 Kb (ftp)(http) NGD

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap