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| Status |
Public on Jan 01, 2010 |
| Title |
NimbleGen Human Meth 385K Prom Plus CpG Array [2006-11-02_HG18_CpG_Promo] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
See www.nimblegen.com
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| Description |
Format: 385K
Source: UCSC
Build: HG18
Probe Length: 50-75mer
Recommended Storage: Store arrays desiccated at room temperature.
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| Submission date |
Dec 09, 2009 |
| Last update date |
Sep 06, 2011 |
| Contact name |
Xiwei Wu |
| E-mail(s) |
xwu@coh.org
|
| Organization name |
City of Hope National Medical Center
|
| Department |
Computational and Quantitative Medicine
|
| Street address |
1500 E. Duarte Rd.
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| City |
Duarte |
| State/province |
CA |
| ZIP/Postal code |
91010 |
| Country |
USA |
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| Samples (61)
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GSM481173, GSM481174, GSM481175, GSM481176, GSM481177, GSM481178
GSM481179, GSM481180, GSM481181, GSM481182, GSM481183, GSM481184, GSM481185, GSM481186, GSM481187, GSM481188, GSM481189, GSM481190, GSM481191, GSM481192, GSM481193, GSM481194, GSM481195, GSM481196, GSM481197, GSM481198, GSM481199, GSM481200, GSM481201, GSM481202, GSM481203, GSM481204, GSM481205, GSM481206, GSM481207, GSM481208, GSM888855, GSM888856, GSM888857, GSM888858, GSM888859, GSM888860, GSM888861, GSM888862, GSM888863, GSM888864, GSM888865, GSM888866, GSM888867, GSM888868, GSM888869, GSM888870, GSM888871, GSM888872, GSM888873, GSM888874, GSM888875, GSM888876, GSM888877, GSM888878, GSM888879
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| Series (2) |
| GSE19391 |
CpG island hypermethylation in human astrocytomas |
| GSE36319 |
Genome-wide methylation profiling identifies hypermethylated biomarkers in high-grade cervical intraepithelial neoplasia |
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| Data table header descriptions |
| ID |
Probe ID |
| SEQ_ID |
The NimbleGen sequence identifier |
| CHROMOSOME |
Chromosome number |
| RANGE_GB |
Chromosome accession.version |
| RANGE_START |
Probe start site (relative to RANGE_GB accession) |
| RANGE_END |
Probe end site (relative to RANGE_GB accession) |
| SEQUENCE |
actual probe sequence |
| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01P000007196 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7196 |
7245 |
CCAGCCAGGGGGTCCAGGAAGACATACTTCTTCTACCTACAGAGGCGACA |
| CHR01P000007286 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7286 |
7335 |
GTTCCTCTCCCACATCATCAGGGGCACAGCGTGCACTGTGGGGTCCCAGG |
| CHR01P000007376 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7376 |
7425 |
CTATGTGCTGTACCTGTGTCTGATGCCCTGGGTCCCCACTAAGCCAGGCC |
| CHR01P000007481 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7481 |
7530 |
GTGTTGAAGAGCAGCAAGGAGCTGACAGAGCTGATGTTGCTGGGAAGACC |
| CHR01P000007586 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7586 |
7635 |
GGAAAGTCCTTCAGCTTCTCCTGAGAGGGCCAGGATGGCCAAGGGATGGT |
| CHR01P000007696 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7696 |
7745 |
ACAGAACCCTATGGTGGCCCCGGCTCCTCCCCAGTATCCAGTCCTCCTGG |
| CHR01P000007776 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7776 |
7825 |
ACCTGCAGGGCCCGCTCGTCCAGGGGGCGGTGCTTGCTCTGGATCCTGTG |
| CHR01P000007896 |
chr1:6973-7973 |
chr1 |
NC_000001.9 |
7896 |
7945 |
GGAGCAGGGTACTTGGCACTGGAGAACACCTGTGGACACAGGGACAAGTC |
| CHR01P000014561 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
14561 |
14610 |
ATGGCCCTCTCATCAGGTGGGGGTGAGTGGCAGCACCCACCTGCTGAAGA |
| CHR01P000014666 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
14666 |
14715 |
CTCCTCTCGCCGCAGGTCTGGCTGGATGAAGGGCACGGCATAGGTCTGAC |
| CHR01P000014756 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
14756 |
14805 |
TGTGGGTCGGAGCCGGAGCGTCAGAGCCACCCACGACCACCGGCACGCCC |
| CHR01P000014856 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
14856 |
14905 |
TGCACATAGCTTCAGCCTGCACAGATAGGGGAGTAGGGGACAGAGCATTT |
| CHR01P000014971 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
14971 |
15020 |
CAGGGCCCGGGACTGGGGAATCTGTAGGGTCAATGGAGGAGTTCAGAGAA |
| CHR01P000015071 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
15071 |
15120 |
CTTTCCATACCTTGTCTCAGTTCAGCTCCCCACCTTGGATAAACAAGAAA |
| CHR01P000015161 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
15161 |
15210 |
TAGAAATGGGGTAGCAGGGGAGATTGCCTGATCAACTGCCAAATGGTACA |
| CHR01P000015276 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
15276 |
15325 |
TGAGGCCTGCTCCTGAAACAGACTGGGCAGTGGCTAGTGACTCTAGGTAT |
| CHR01P000015376 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
15376 |
15425 |
AAAGAGGTGCCTGTGGGGGTGGAGGACAGGAAGGAAAAACACTCCTGGAA |
| CHR01P000015456 |
chr1:14554-15554 |
chr1 |
NC_000001.9 |
15456 |
15505 |
TGGGTTTAATTAACTCCTCTCCCTGGTGCCACTAAAGCAGCAATCACACT |
| CHR01P000018603 |
chr1:18598-19673 |
chr1 |
NC_000001.9 |
18603 |
18652 |
TCTTTGGGACCGCGGTTTATACTTTCGAAGTGCTCGGAGCCCTTCCTCCA |
| CHR01P000018718 |
chr1:18598-19673 |
chr1 |
NC_000001.9 |
18718 |
18767 |
GAACCCAACGCGGTGTCAGAGAAGTGGGGTCCCCTACGAGGGACCAGGAG |
Total number of rows: 385017
Table truncated, full table size 47967 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9771_2006-11-02_HG18_CpG_Promo.ndf.gz |
24.5 Mb |
(ftp)(http) |
NDF |
| GPL9771_2006-11-02_HG18_CpG_Promo.pos.gz |
3.5 Mb |
(ftp)(http) |
POS |
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