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Series GSE103477 Query DataSets for GSE103477
Status Public on Aug 23, 2018
Title Transcription elongation regulates genome 3D structure
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary How transcription affects genome organization in the nucleus is poorly understood. Analyzing influenza A virus (IAV)-infected human macrophages, we observe rapid reorganization of chromatin interactions. These changes occur where IAV NS1 protein-induced global inhibition of transcription termination leads to read-through transcription for hundreds of kilobases past the ends of highly transcribed genes. In these read-through regions, RNA polymerase II induces cohesin displacement from CTCF sites at loop anchors, leading to disrupted chromatin interactions and decompaction. Conversely, transcription elongation inhibition allows cohesin to accumulate at previously transcribed CTCF sites and to mediate chromatin looping and compaction. Data from non-viral stimuli indicates that transcription generally regulates cohesin and genome organization within gene bodies. Additionally, transcription into heterochromatin regions switches them from the inert (B) to the permissive (A) chromatin compartment and enables transcription factor binding. Our data indicate that transcription elongation by RNA polymerase II remodels genome architecture in vivo.
 
Overall design Analysis of transcription, epigenetics, and chromatin structure during influenza A virus (IAV) infection in macrophages and during expression of IAV NS1 protein in THP-1 cells treated with IFNb, Pam3csk4, dexamethasone, and/or flavopiridol
 
Contributor(s) Benner C, Heinz S, Chang M, Texari L, Hayes M, Urbanowski M, Givarkes N, Rialdi A, White KM, Albrecht RA, Pache L, Marazzi I, García-Sastre A, Shaw ML
Citation(s) 30146161
NIH grant(s)
Grant ID Grant title Affiliation Name
U19 AI106754 Genomics Core THE SALK INSTITUTE FOR BIOLOGICAL STUDIES Christopher W Benner
U19 AI106754 Multiscale analysis of influenza host-pathogen interactions: Fluomics MOUNT SINAI SCHOOL OF MEDICINE Adolfo Garcia-Sastre
Submission date Sep 05, 2017
Last update date May 14, 2019
Contact name Christopher Benner
E-mail(s) cbenner@ucsd.edu
Organization name University of California, San Diego (UCSD)
Department Medicine
Street address 9500 Gilman Dr. MC 0640
City La Jolla
State/province California
ZIP/Postal code 92093-0640
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (253)
GSM3111876 MDM-HiC-06h-Mock-r3
GSM3111877 MDM-HiC-06h-Mock-r4
GSM3111878 MDM-HiC-06h-H5N1-r3
Relations
BioProject PRJNA401748
SRA SRP117084

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103477_Sample100.MDM-PU1-Mock.peaks.bed.gz 1.6 Mb (ftp)(http) BED
GSE103477_Sample101.MDM-PU1-H5N1.peaks.bed.gz 1.9 Mb (ftp)(http) BED
GSE103477_Sample102.MDM-PU1-dNS1.peaks.bed.gz 1.8 Mb (ftp)(http) BED
GSE103477_Sample103.MDM-PU1-IFNb.peaks.bed.gz 1.6 Mb (ftp)(http) BED
GSE103477_Sample105.THP1-Rad21-eGFP-IFNb-r1.peaks.bed.gz 324.5 Kb (ftp)(http) BED
GSE103477_Sample106.THP1-Rad21-eGFP-IFNb-r2.peaks.bed.gz 620.0 Kb (ftp)(http) BED
GSE103477_Sample107.THP1-Rad21-NS1-IFNb-r1.peaks.bed.gz 291.8 Kb (ftp)(http) BED
GSE103477_Sample108.THP1-Rad21-NS1-IFNb-r2.peaks.bed.gz 667.2 Kb (ftp)(http) BED
GSE103477_Sample109.THP1-Rad21-NS1-IFNb-Flavopiridol-r1.peaks.bed.gz 643.1 Kb (ftp)(http) BED
GSE103477_Sample110.THP1-PolII-eGFP-IFNb-r1.peaks.bed.gz 373.6 Kb (ftp)(http) BED
GSE103477_Sample111.THP1-PolII-eGFP-IFNb-r2.peaks.bed.gz 359.2 Kb (ftp)(http) BED
GSE103477_Sample112.THP1-PolII-NS1-IFNb-r1.peaks.bed.gz 324.9 Kb (ftp)(http) BED
GSE103477_Sample113.THP1-PolII-NS1-IFNb-r2.peaks.bed.gz 333.8 Kb (ftp)(http) BED
GSE103477_Sample114.THP1-PolII-NS1-IFNb-Flavopiridol-r1.peaks.bed.gz 239.4 Kb (ftp)(http) BED
GSE103477_Sample115.THP1-CTCF-eGFP-IFNb-r1.peaks.bed.gz 384.3 Kb (ftp)(http) BED
GSE103477_Sample116.THP1-CTCF-NS1-IFNb-r1.peaks.bed.gz 366.0 Kb (ftp)(http) BED
GSE103477_Sample118.MDM-mCpG-Mock.bedGraph.gz 15.8 Mb (ftp)(http) BEDGRAPH
GSE103477_Sample119.MDM-mCpG-H5N1.bedGraph.gz 15.7 Mb (ftp)(http) BEDGRAPH
GSE103477_Sample120.THP1-HiC-siCtrl-eGFP-Pam3csk-0h.hic 707.3 Mb (ftp)(http) HIC
GSE103477_Sample121.THP1-HiC-siCtrl-eGFP-Pam3csk-4h.hic 722.7 Mb (ftp)(http) HIC
GSE103477_Sample122.THP1-HiC-siCtrl-NS1-Pam3csk-0h.hic 787.9 Mb (ftp)(http) HIC
GSE103477_Sample123.THP1-HiC-siCtrl-NS1-Pam3csk-4h.hic 849.8 Mb (ftp)(http) HIC
GSE103477_Sample124.THP1-HiC-siCtrl-NS1-Pam3csk-7h-Flavo-3h.hic 732.2 Mb (ftp)(http) HIC
GSE103477_Sample125.THP1-HiC-siNIPBL-eGFP-Pam3csk-4h.hic 719.1 Mb (ftp)(http) HIC
GSE103477_Sample126.THP1-HiC-siNIPBL-NS1-Pam3csk-4h.hic 742.6 Mb (ftp)(http) HIC
GSE103477_Sample127.THP1-HiC-siNIPBL-NS1-Pam3csk-7h-Flavo-3h.hic 765.5 Mb (ftp)(http) HIC
GSE103477_Sample128.THP1-HiC-siWAPL-eGFP-Pam3csk-4h.hic 602.7 Mb (ftp)(http) HIC
GSE103477_Sample129.THP1-HiC-siWAPL-NS1-Pam3csk-4h.hic 636.5 Mb (ftp)(http) HIC
GSE103477_Sample13.MDM-HiC-06h-Mock.hic 944.6 Mb (ftp)(http) HIC
GSE103477_Sample130.THP1-HiC-siWAPL-NS1-Pam3csk-7h-Flavo-3h.hic 624.3 Mb (ftp)(http) HIC
GSE103477_Sample131.THP1-HiC-Pam3csk-000m-Flavo-000m.hic 724.2 Mb (ftp)(http) HIC
GSE103477_Sample132.THP1-HiC-Pam3csk-120m-Flavo-000m.hic 719.4 Mb (ftp)(http) HIC
GSE103477_Sample133.THP1-HiC-Pam3csk-360m-Flavo-240m.hic 692.1 Mb (ftp)(http) HIC
GSE103477_Sample134.THP1-HiC-Pam3csk-000m-Flavo-240m.hic 679.0 Mb (ftp)(http) HIC
GSE103477_Sample135.THP1mac-HiC-Dex-0h.hic 596.7 Mb (ftp)(http) HIC
GSE103477_Sample136.THP1mac-HiC-Dex-6h.hic 728.7 Mb (ftp)(http) HIC
GSE103477_Sample137.THP1mac-HiC-IFNb-0h.hic 507.4 Mb (ftp)(http) HIC
GSE103477_Sample138.THP1mac-HiC-IFNb-6h.hic 700.7 Mb (ftp)(http) HIC
GSE103477_Sample139.THP1-PolII-siCtrl-eGFP-Pam3csk-0h.peaks.bed.gz 843.1 Kb (ftp)(http) BED
GSE103477_Sample140.THP1-PolII-siCtrl-eGFP-Pam3csk-4h.peaks.bed.gz 817.3 Kb (ftp)(http) BED
GSE103477_Sample141.THP1-PolII-siCtrl-NS1-Pam3csk-0h.peaks.bed.gz 606.5 Kb (ftp)(http) BED
GSE103477_Sample142.THP1-PolII-siCtrl-NS1-Pam3csk-4h.peaks.bed.gz 589.2 Kb (ftp)(http) BED
GSE103477_Sample143.THP1-PolII-siCtrl-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 444.5 Kb (ftp)(http) BED
GSE103477_Sample144.THP1-PolII-siNIPBL-eGFP-Pam3csk-4h.peaks.bed.gz 771.4 Kb (ftp)(http) BED
GSE103477_Sample145.THP1-PolII-siNIPBL-NS1-Pam3csk-4h.peaks.bed.gz 605.6 Kb (ftp)(http) BED
GSE103477_Sample146.THP1-PolII-siNIPBL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 445.1 Kb (ftp)(http) BED
GSE103477_Sample147.THP1-PolII-siWAPL-eGFP-Pam3csk-4h.peaks.bed.gz 785.3 Kb (ftp)(http) BED
GSE103477_Sample148.THP1-PolII-siWAPL-NS1-Pam3csk-4h.peaks.bed.gz 611.8 Kb (ftp)(http) BED
GSE103477_Sample149.THP1-PolII-siWAPL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 471.7 Kb (ftp)(http) BED
GSE103477_Sample15.MDM-HiC-06h-H5N1.hic 981.0 Mb (ftp)(http) HIC
GSE103477_Sample150.THP1-Rad21-siCtrl-eGFP-Pam3csk-0h.peaks.bed.gz 556.6 Kb (ftp)(http) BED
GSE103477_Sample151.THP1-Rad21-siCtrl-eGFP-Pam3csk-4h.peaks.bed.gz 513.2 Kb (ftp)(http) BED
GSE103477_Sample152.THP1-Rad21-siCtrl-NS1-Pam3csk-0h.peaks.bed.gz 535.2 Kb (ftp)(http) BED
GSE103477_Sample153.THP1-Rad21-siCtrl-NS1-Pam3csk-4h.peaks.bed.gz 533.6 Kb (ftp)(http) BED
GSE103477_Sample154.THP1-Rad21-siCtrl-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 479.1 Kb (ftp)(http) BED
GSE103477_Sample155.THP1-Rad21-siNIPBL-eGFP-Pam3csk-4h.peaks.bed.gz 416.3 Kb (ftp)(http) BED
GSE103477_Sample156.THP1-Rad21-siNIPBL-NS1-Pam3csk-4h.peaks.bed.gz 393.6 Kb (ftp)(http) BED
GSE103477_Sample157.THP1-Rad21-siNIPBL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 411.8 Kb (ftp)(http) BED
GSE103477_Sample158.THP1-Rad21-siWAPL-eGFP-Pam3csk-4h.peaks.bed.gz 563.5 Kb (ftp)(http) BED
GSE103477_Sample159.THP1-Rad21-siWAPL-NS1-Pam3csk-4h.peaks.bed.gz 603.4 Kb (ftp)(http) BED
GSE103477_Sample160.THP1-Rad21-siWAPL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 516.0 Kb (ftp)(http) BED
GSE103477_Sample161.THP1-CTCF-siCtrl-eGFP-Pam3csk-0h.peaks.bed.gz 569.4 Kb (ftp)(http) BED
GSE103477_Sample162.THP1-CTCF-siCtrl-eGFP-Pam3csk-4h.peaks.bed.gz 573.1 Kb (ftp)(http) BED
GSE103477_Sample163.THP1-CTCF-siCtrl-NS1-Pam3csk-0h.peaks.bed.gz 533.3 Kb (ftp)(http) BED
GSE103477_Sample164.THP1-CTCF-siCtrl-NS1-Pam3csk-4h.peaks.bed.gz 518.8 Kb (ftp)(http) BED
GSE103477_Sample165.THP1-CTCF-siCtrl-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 453.4 Kb (ftp)(http) BED
GSE103477_Sample166.THP1-CTCF-siNIPBL-eGFP-Pam3csk-4h.peaks.bed.gz 479.9 Kb (ftp)(http) BED
GSE103477_Sample167.THP1-CTCF-siNIPBL-NS1-Pam3csk-4h.peaks.bed.gz 513.9 Kb (ftp)(http) BED
GSE103477_Sample168.THP1-CTCF-siNIPBL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 580.3 Kb (ftp)(http) BED
GSE103477_Sample169.THP1-CTCF-siWAPL-eGFP-Pam3csk-4h.peaks.bed.gz 539.0 Kb (ftp)(http) BED
GSE103477_Sample17.MDM-HiC-06h-dNS1.hic 1.0 Gb (ftp)(http) HIC
GSE103477_Sample170.THP1-CTCF-siWAPL-NS1-Pam3csk-4h.peaks.bed.gz 572.3 Kb (ftp)(http) BED
GSE103477_Sample171.THP1-CTCF-siWAPL-NS1-Pam3csk-7h-Flavo-3h.peaks.bed.gz 496.1 Kb (ftp)(http) BED
GSE103477_Sample175.THP1-PolII-Pam3csk-000m-Flavo-000m.peaks.bed.gz 835.6 Kb (ftp)(http) BED
GSE103477_Sample176.THP1-PolII-Pam3csk-020m-Flavo-000m.peaks.bed.gz 738.9 Kb (ftp)(http) BED
GSE103477_Sample177.THP1-PolII-Pam3csk-025m-Flavo-000m.peaks.bed.gz 710.3 Kb (ftp)(http) BED
GSE103477_Sample178.THP1-PolII-Pam3csk-030m-Flavo-000m.peaks.bed.gz 687.0 Kb (ftp)(http) BED
GSE103477_Sample179.THP1-PolII-Pam3csk-045m-Flavo-000m.peaks.bed.gz 618.6 Kb (ftp)(http) BED
GSE103477_Sample180.THP1-PolII-Pam3csk-060m-Flavo-000m.peaks.bed.gz 596.7 Kb (ftp)(http) BED
GSE103477_Sample181.THP1-PolII-Pam3csk-120m-Flavo-000m.peaks.bed.gz 764.8 Kb (ftp)(http) BED
GSE103477_Sample182.THP1-PolII-Pam3csk-150m-Flavo-030m.peaks.bed.gz 654.8 Kb (ftp)(http) BED
GSE103477_Sample183.THP1-PolII-Pam3csk-180m-Flavo-060m.peaks.bed.gz 549.6 Kb (ftp)(http) BED
GSE103477_Sample184.THP1-PolII-Pam3csk-360m-Flavo-240m.peaks.bed.gz 447.9 Kb (ftp)(http) BED
GSE103477_Sample185.THP1-PolII-Pam3csk-000m-Flavo-240m.peaks.bed.gz 382.6 Kb (ftp)(http) BED
GSE103477_Sample186.THP1-Rad21-Pam3csk-000m-Flavo-000m.peaks.bed.gz 622.4 Kb (ftp)(http) BED
GSE103477_Sample187.THP1-Rad21-Pam3csk-020m-Flavo-000m.peaks.bed.gz 659.9 Kb (ftp)(http) BED
GSE103477_Sample188.THP1-Rad21-Pam3csk-025m-Flavo-000m.peaks.bed.gz 566.3 Kb (ftp)(http) BED
GSE103477_Sample189.THP1-Rad21-Pam3csk-030m-Flavo-000m.peaks.bed.gz 561.5 Kb (ftp)(http) BED
GSE103477_Sample19.MDM-HiC-06h-IFNb.hic 961.5 Mb (ftp)(http) HIC
GSE103477_Sample190.THP1-Rad21-Pam3csk-045m-Flavo-000m.peaks.bed.gz 521.0 Kb (ftp)(http) BED
GSE103477_Sample191.THP1-Rad21-Pam3csk-060m-Flavo-000m.peaks.bed.gz 526.4 Kb (ftp)(http) BED
GSE103477_Sample192.THP1-Rad21-Pam3csk-120m-Flavo-000m.peaks.bed.gz 785.7 Kb (ftp)(http) BED
GSE103477_Sample193.THP1-Rad21-Pam3csk-150m-Flavo-030m.peaks.bed.gz 652.9 Kb (ftp)(http) BED
GSE103477_Sample194.THP1-Rad21-Pam3csk-180m-Flavo-060m.peaks.bed.gz 690.1 Kb (ftp)(http) BED
GSE103477_Sample195.THP1-Rad21-Pam3csk-360m-Flavo-240m.peaks.bed.gz 736.4 Kb (ftp)(http) BED
GSE103477_Sample196.THP1-Rad21-Pam3csk-000m-Flavo-240m.peaks.bed.gz 750.0 Kb (ftp)(http) BED
GSE103477_Sample197.THP1-CTCF-Pam3csk-000m-Flavo-000m.peaks.bed.gz 768.2 Kb (ftp)(http) BED
GSE103477_Sample198.THP1-CTCF-Pam3csk-020m-Flavo-000m.peaks.bed.gz 767.1 Kb (ftp)(http) BED
GSE103477_Sample199.THP1-CTCF-Pam3csk-025m-Flavo-000m.peaks.bed.gz 776.4 Kb (ftp)(http) BED
GSE103477_Sample200.THP1-CTCF-Pam3csk-030m-Flavo-000m.peaks.bed.gz 728.2 Kb (ftp)(http) BED
GSE103477_Sample201.THP1-CTCF-Pam3csk-045m-Flavo-000m.peaks.bed.gz 753.6 Kb (ftp)(http) BED
GSE103477_Sample202.THP1-CTCF-Pam3csk-060m-Flavo-000m.peaks.bed.gz 709.3 Kb (ftp)(http) BED
GSE103477_Sample203.THP1-CTCF-Pam3csk-120m-Flavo-000m.peaks.bed.gz 800.2 Kb (ftp)(http) BED
GSE103477_Sample204.THP1-CTCF-Pam3csk-150m-Flavo-030m.peaks.bed.gz 749.6 Kb (ftp)(http) BED
GSE103477_Sample205.THP1-CTCF-Pam3csk-180m-Flavo-060m.peaks.bed.gz 743.6 Kb (ftp)(http) BED
GSE103477_Sample206.THP1-CTCF-Pam3csk-360m-Flavo-240m.peaks.bed.gz 752.4 Kb (ftp)(http) BED
GSE103477_Sample207.THP1-CTCF-Pam3csk-000m-Flavo-240m.peaks.bed.gz 863.8 Kb (ftp)(http) BED
GSE103477_Sample21.THP1-HiC-eGFP-IFNb.hic 878.5 Mb (ftp)(http) HIC
GSE103477_Sample219.THP1-H3K27ac.peaks.bed.gz 380.8 Kb (ftp)(http) BED
GSE103477_Sample220.THP1mac-PolII-Dex-0h.peaks.bed.gz 795.7 Kb (ftp)(http) BED
GSE103477_Sample221.THP1mac-PolII-Dex-6h.peaks.bed.gz 739.4 Kb (ftp)(http) BED
GSE103477_Sample222.THP1mac-PolII-IFNb-0h.peaks.bed.gz 626.9 Kb (ftp)(http) BED
GSE103477_Sample223.THP1mac-PolII-IFNb-6h.peaks.bed.gz 735.2 Kb (ftp)(http) BED
GSE103477_Sample224.THP1mac-Rad21-Dex-0h.peaks.bed.gz 686.1 Kb (ftp)(http) BED
GSE103477_Sample225.THP1mac-Rad21-Dex-6h.peaks.bed.gz 622.9 Kb (ftp)(http) BED
GSE103477_Sample226.THP1mac-Rad21-IFNb-0h.peaks.bed.gz 692.3 Kb (ftp)(http) BED
GSE103477_Sample227.THP1mac-Rad21-IFNb-6h.peaks.bed.gz 728.9 Kb (ftp)(http) BED
GSE103477_Sample228.THP1mac-CTCF-Dex-0h.peaks.bed.gz 424.1 Kb (ftp)(http) BED
GSE103477_Sample229.THP1mac-CTCF-Dex-6h.peaks.bed.gz 522.1 Kb (ftp)(http) BED
GSE103477_Sample23.THP1-HiC-NS1-IFNb.hic 872.1 Mb (ftp)(http) HIC
GSE103477_Sample25.THP1-HiC-NS1-IFNb-Flavopiridol.hic 601.8 Mb (ftp)(http) HIC
GSE103477_Sample252.THP1mac-Startseq-Mock.peaks.bed.gz 980.5 Kb (ftp)(http) BED
GSE103477_Sample253.THP1mac-Startseq-H5N1.peaks.bed.gz 942.5 Kb (ftp)(http) BED
GSE103477_Sample36.MDM-CTCF-Mock.peaks.bed.gz 403.7 Kb (ftp)(http) BED
GSE103477_Sample38.MDM-CTCF-H5N1.peaks.bed.gz 402.8 Kb (ftp)(http) BED
GSE103477_Sample40.MDM-CTCF-dNS1.peaks.bed.gz 385.9 Kb (ftp)(http) BED
GSE103477_Sample42.MDM-CTCF-IFNb.peaks.bed.gz 392.7 Kb (ftp)(http) BED
GSE103477_Sample44.MDM-Rad21-Mock.peaks.bed.gz 525.5 Kb (ftp)(http) BED
GSE103477_Sample45.MDM-Rad21-H5N1.peaks.bed.gz 515.7 Kb (ftp)(http) BED
GSE103477_Sample46.MDM-Rad21-dNS1.peaks.bed.gz 506.6 Kb (ftp)(http) BED
GSE103477_Sample47.MDM-Rad21-IFNb.peaks.bed.gz 453.4 Kb (ftp)(http) BED
GSE103477_Sample48.MDM-H3K27ac-Mock.peaks.bed.gz 538.9 Kb (ftp)(http) BED
GSE103477_Sample49.MDM-H3K27ac-H5N1.peaks.bed.gz 490.6 Kb (ftp)(http) BED
GSE103477_Sample50.MDM-H3K27ac-dNS1.peaks.bed.gz 567.1 Kb (ftp)(http) BED
GSE103477_Sample51.MDM-H3K27ac-IFNb.peaks.bed.gz 533.8 Kb (ftp)(http) BED
GSE103477_Sample52.MDM-H3K27me3-Mock.peaks.bed.gz 888.7 Kb (ftp)(http) BED
GSE103477_Sample54.MDM-H3K27me3-H5N1.peaks.bed.gz 817.4 Kb (ftp)(http) BED
GSE103477_Sample56.MDM-H3K27me3-dNS1.peaks.bed.gz 861.9 Kb (ftp)(http) BED
GSE103477_Sample58.MDM-H3K27me3-IFNb.peaks.bed.gz 865.0 Kb (ftp)(http) BED
GSE103477_Sample60.MDM-H3K36me3-Mock.peaks.bed.gz 1.2 Mb (ftp)(http) BED
GSE103477_Sample62.MDM-H3K36me3-H5N1.peaks.bed.gz 1.3 Mb (ftp)(http) BED
GSE103477_Sample64.MDM-H3K36me3-dNS1.peaks.bed.gz 1.3 Mb (ftp)(http) BED
GSE103477_Sample66.MDM-H3K36me3-IFNb.peaks.bed.gz 1.3 Mb (ftp)(http) BED
GSE103477_Sample68.MDM-H3K4me3-Mock.peaks.bed.gz 624.7 Kb (ftp)(http) BED
GSE103477_Sample69.MDM-H3K4me3-H5N1.peaks.bed.gz 732.4 Kb (ftp)(http) BED
GSE103477_Sample70.MDM-H3K4me3-dNS1.peaks.bed.gz 636.9 Kb (ftp)(http) BED
GSE103477_Sample71.MDM-H3K4me3-IFNb.peaks.bed.gz 651.2 Kb (ftp)(http) BED
GSE103477_Sample72.MDM-H3K9me3-Mock.peaks.bed.gz 639.4 Kb (ftp)(http) BED
GSE103477_Sample74.MDM-H3K9me3-H5N1.peaks.bed.gz 749.0 Kb (ftp)(http) BED
GSE103477_Sample76.MDM-H3K9me3-dNS1.peaks.bed.gz 592.4 Kb (ftp)(http) BED
GSE103477_Sample78.MDM-H3K9me3-IFNb.peaks.bed.gz 595.1 Kb (ftp)(http) BED
GSE103477_Sample80.MDM-PolII-Mock.peaks.bed.gz 822.9 Kb (ftp)(http) BED
GSE103477_Sample82.MDM-PolII-H5N1.peaks.bed.gz 755.1 Kb (ftp)(http) BED
GSE103477_Sample84.MDM-PolII-dNS1.peaks.bed.gz 670.8 Kb (ftp)(http) BED
GSE103477_Sample86.MDM-PolII-IFNb.peaks.bed.gz 681.1 Kb (ftp)(http) BED
GSE103477_Sample88.MDM-PolIIs2p-Mock.peaks.bed.gz 410.5 Kb (ftp)(http) BED
GSE103477_Sample89.MDM-PolIIs2p-H5N1.peaks.bed.gz 151.5 Kb (ftp)(http) BED
GSE103477_Sample90.MDM-PolIIs2p-dNS1.peaks.bed.gz 421.7 Kb (ftp)(http) BED
GSE103477_Sample91.MDM-PolIIs2p-IFNb.peaks.bed.gz 299.8 Kb (ftp)(http) BED
GSE103477_Sample92.MDM-PolIIs5p-Mock.peaks.bed.gz 424.2 Kb (ftp)(http) BED
GSE103477_Sample93.MDM-PolIIs5p-H5N1.peaks.bed.gz 296.6 Kb (ftp)(http) BED
GSE103477_Sample94.MDM-PolIIs5p-dNS1.peaks.bed.gz 436.8 Kb (ftp)(http) BED
GSE103477_Sample95.MDM-PolIIs5p-IFNb.peaks.bed.gz 352.9 Kb (ftp)(http) BED
GSE103477_Sample96.MDM-PolIIs7p-Mock.peaks.bed.gz 348.3 Kb (ftp)(http) BED
GSE103477_Sample97.MDM-PolIIs7p-H5N1.peaks.bed.gz 352.4 Kb (ftp)(http) BED
GSE103477_Sample98.MDM-PolIIs7p-dNS1.peaks.bed.gz 517.1 Kb (ftp)(http) BED
GSE103477_Sample99.MDM-PolIIs7p-IFNb.peaks.bed.gz 355.8 Kb (ftp)(http) BED
GSE103477_fpkm.txt.gz 1.4 Mb (ftp)(http) TXT
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