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Series GSE111006 Query DataSets for GSE111006
Status Public on Nov 14, 2019
Title Study of sarcopenia in human muscle biopsies of elderly individuals, Hertfordshire Sarcopenia Study
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: The main goal of this study is to compare skeletal muscle transcriptome profilings derived from sarcopenic versus healthy subjects.
Methods: We use high coverage RNA sequencing of human skeletal muscle biopsies to analyze genome-wide transcriptional changes in human sarcopenia benchmarked to healthy elderly controls.
 
Overall design 28 muscle biopsies from healthy subjects, 4 muscle biopsies from sarcopenic subjects, 5 muscle biopsies from subjects with only low muscle mass, 3 muscle biopsies from subjects with only low muscle strength or low muscle function.
 
Contributor(s) Migliavacca E, Charpagne A, Barton S, Cooper C, Garratt ES, Godfrey KM, Lillycrop KA, Sayer AA, Titcombe P, Westbury L, Patel HP, Syddall HE, Raymond F, Patrick D, Feige JN
Citation(s) 31862890
Submission date Feb 22, 2018
Last update date Dec 31, 2019
Contact name Jerome Feige
Organization name Nestle Institute Of Health Sciences
Department Musculo-Skeletal Health
Street address EPFL Innovation Park, Building H
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (40)
GSM3020021 Sample 1 [hss]
GSM3020022 Sample 2 [hss]
GSM3020023 Sample 3 [hss]
This SubSeries is part of SuperSeries:
GSE111017 Study of sarcopenia in human muscle biopsies of elderly individuals
Relations
BioProject PRJNA435580
SRA SRP133296

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111006_allSamplesCounts_htseqcov1_hss_forGEO.csv.gz 1.9 Mb (ftp)(http) CSV
GSE111006_lcpmy1_hss_forGEO.csv.gz 3.5 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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